Oncorhynchus keta (chum salmon): 118362903
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Entry
118362903 CDS
T09424
Name
(RefSeq) ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118362903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118362903
03009 Ribosome biogenesis [BR:
oke03009
]
118362903
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118362903
Spliceosome [BR:
oke03041
]
Complex A
U2 snRNP components
U2 related factors
118362903
Complex B
118362903
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
118362903
Ribosome biogenesis [BR:
oke03009
]
Eukaryotic type
90S particles
Helicases
118362903
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_19
AAA_22
AAA_25
Cas3-like_C_2
nSTAND3
SRP54
Flavi_DEAD
AAA_29
nSTAND_NTPase5
DUF3915
Motif
Other DBs
NCBI-GeneID:
118362903
NCBI-ProteinID:
XP_052342532
LinkDB
All DBs
Position
29:complement(41005839..41022440)
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AA seq
759 aa
AA seq
DB search
MSKRHRLDLGDDYSNKKRSDGKDRDRDRDRDERSKDRDRDRDRDRDRDRDVKPSVLPPNT
MMAGGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILARHQSF
VLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVMLGQE
VGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVL
KEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAI
RTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTLPPQQ
QQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESL
LVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKK
LGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVI
ASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFKQ
NHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRALVTG
FFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSDIKPE
WLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggcgatgactactcaaataaaaagagatctgat
gggaaagaccgagatcgcgacagggaccgcgacgaacgctctaaagacagggaccgcgac
agagatcgggaccgggaccgagatagggatgtgaagccctctgtcctgccccccaacacc
atgatggccgggggcggcatgctgcctctcaagcagacagccatgcagcagcagatcaac
ccgttcacaaacctgccacacacgccgcgctactatgagatcctgaagaagaggctgcaa
ctgcctgtgtgggagtacaaggagcgcttcaacgacatcctggcacgtcaccagagcttc
gtgcttgtcggagagactggctccgggaaaaccacacagatcccccagtggtgtgtggac
atggtgaagggcttgggtggccccaagaaggcagtggcctgtacccagcccaggagggtg
gcagccatgagcgtggcccagagggtggctgacgagatggacgtcatgctgggccaagag
gtgggatactccatacgatttgaggactgcagctccgccaagaccatactgaagtatatg
acagacggtatgttgcttcgggaagccatgaacgaccccctgctggagcggtatggcgtg
atcatcctggatgaggcccacgagagaactctggccacagacatcctaatgggagtcttg
aaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagcgctacgttagac
gccgggaagttccaagtgtactttgacagctgtccactgctgactattcccggacgcaca
caccccgtggagatcttctacacccctgagccggagcgggactacctggaagccgccatc
cgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgtctgctgttcctc
actggacaagaggaaattgacgaggcctgtaaacggatcaaacgggagatcgacgacttg
ggacctgaagtcggagacatcaaagtcattccactatattccacactgcccccccagcag
caacaaagaatctttgaggccgcaccccccaggaagcccagcggtgcgataggaagaaag
gttgtggtttccacaaacattgctgagacatcccttaccattgacggagtggtgtttgtg
attgatcccggttttgccaagcaaaaggtgtacaaccctcgtatcagggtggagtctctc
ctggtcacggcgatcagcaaagcctcggcgcagcagagggcgggccgcgctggcaggaca
cggccagggaagactttccgtctatacactgagaaagcctacaagaccgagatgcaggac
aacacgtatcccgagattctccggtccaacttgggttctgtcgtgttgcagttgaagaag
ctgggtatcgatgacctggtgcactttgacttcatggatccaccagccccggagaccctg
atgcgggccctggagttgctcaactacttggcggcgctcaacgacgacggcgacctgaca
gagctgggctccatgatggcagagttcccgttggacccccagctggccaagatggtgatc
gccagctgcgagttcaactgctccaacgagatcctctccatcaccgccatgctgtcagtc
ccgcagtgtttcgtccgccccaccgaggctaagaaggcggcggacgagtccaagatgcgg
ttcgcccacattgacggagaccacctgacgctcctcaacgtctaccacgccttcaaacaa
aaccacgagtctacacagtggtgctacgacaactttgtgaactaccgttcgctgatgtcg
gccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaacctgccccggcgc
agcaccgaattcaccagcagagactactacatcaacatccgccgagcgctcgtcacaggc
tttttcatgcaggtggctcatttggagcgcacgggccattacctcacagtcaaggacaac
caggtggtgcagctacacccgtctaccgtcctggaccacaagccagagtgggtgctctac
aatgagtttgtcctcaccaccaagaactacattcgcacctgctcggatatcaaaccggaa
tggctggtgaaggttgctcctcagtactacgaaatgggcaacttcccccagtgtgaagcc
aagaggcagttggagcgaattgttgccaaactccagacaaaggagtattcccagtactga
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