Oncorhynchus keta (chum salmon): 118362984
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Entry
118362984 CDS
T09424
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
oke04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118362984
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118362984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118362984
04121 Ubiquitin system [BR:
oke04121
]
118362984
03400 DNA repair and recombination proteins [BR:
oke03400
]
118362984
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118362984
Spliceosome [BR:
oke03041
]
Complex B
Other components
Prp19 complex
118362984
Complex C
Prp19-CDC5 complex
118362984
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
U-box type E3
118362984
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
118362984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Prp19
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_Vps41
PEP5_VPS11_N
Beta-prop_DCAF4
Beta-prop_HPS5
WD40_RFWD3
U-box
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Beta-prop_DCAF12
PROPPIN
eIF2A
Cytochrom_D1
B-prop_COPA_B_2nd
Nucleoporin_N
ATG16
Cep57_MT_bd
Peripla_BP_2
Motif
Other DBs
NCBI-GeneID:
118362984
NCBI-ProteinID:
XP_052342608
LinkDB
All DBs
Position
29:complement(45830458..45851135)
Genome browser
AA seq
519 aa
AA seq
DB search
MKRQLTFTPEVLTCCTLDNHFSNEVPEHPCVSPVSNQVFERRLIEKYIAENGTDPMNGQP
LSEEQLIDIKVSHPIRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHA
LYQHDAACRVIARLTKEVTAAREALATLKPQAGLVVAQAVASQPSVTAGGAGEPMEVSEQ
VGMIPEIIQKLQDKATVLTTERKKRGKTVPEELVRTEDLSKYRQVATHAGLHSASVPGIL
SLDLCPSDTNKVLTGGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPD
STIRVWSVTGGNCVQVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVT
DEAAGCALTCAQFHPDGLIFGTGTADSQIKIWDLKERTNVANFPGHIGPVTSIAFSENGY
YLATGAQDSSVKLWDLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGTDIRVYICKQW
SEVLNFTEHTGVVTGVAFGEHAQFLTSTGMDRSLKFYSL
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggcaactgacatttactcctgaggtgctgacatgttgcaccctcgacaaccac
ttctcgaatgaggtgccggagcacccctgcgtgtcgccggtgtccaaccaggtgttcgag
cggcggctgattgagaagtacatcgccgagaatggaacagaccctatgaatgggcagcct
ctgtcagaggaacagctgatagacattaaagtctctcaccccatcagacccaaagctccc
tcatccactagtatcccagccatcctcaaagctctgcaggacgagtgggatgcggtgatg
ctccacagtttcaccctgaggcagcagttacagacgacacgtcaggagttgagccacgcc
ctctaccagcacgacgccgcctgcagggtcatcgcccgtctcaccaaggaggtcactgcc
gccagagaggctctggccactctgaagccacaggcgggattggtggttgctcaggcagtc
gcttcccagccctctgtcacggctggaggtgcaggagagcccatggaggtcagtgagcag
gtgggaatgataccagagatcatacagaagctgcaagacaaggccactgtcctgaccacg
gagagaaagaagagaggaaagacagttccagaagagctggtccgaacggaggacctcagc
aagtacagacaagtggctacccatgctggtctccacagtgccagtgtgcctgggatcctg
tctctggacctgtgtccctccgacaccaacaaagtgctcactggcggggctgataagaac
gtggtggtgtttgataagaaggaggagcagatcatcgcaaccctgaaaggacataccaag
aaggtcacctctgtcatctaccacccctctcagtcggtagtgttctcggcctctccagac
agcactatccgcgtgtggtccgttaccgggggcaactgtgtccaggtggtgcgggctcac
gaggcgagcgtcaccgggctctctctccacgccaccggagactacctgctcagctcctcc
gaggatcagtactgggccttctctgacatccaaacaggtcgtgttctcaccaaagtcact
gatgaggctgcaggatgtgctctgacctgtgcccagttccaccctgacggtctgatcttc
gggacggggacggccgactctcagatcaagatctgggacctgaaggagcgcaccaatgtg
gccaacttccccggccacatcggccctgtcacctccatcgccttctctgagaacggatac
tacctggctacaggtgcccaggacagctcagtgaagctctgggatctgaggaagctgaaa
aacttcaaaaccatcaccctggacaacaactacgaggtgaagtccctggtgtttgaccag
agtgggacgtacctggctgtgggtggcactgacatcagggtctacatctgtaagcagtgg
tccgaggtcctcaacttcacagaacacactggggtggtgactggcgtggcgttcggggag
cacgcacagttcctcacctccaccggaatggacaggagcctcaagttctacagcctgtaa
DBGET
integrated database retrieval system
