Oncorhynchus keta (chum salmon): 118363308
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Entry
118363308 CDS
T09424
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118363308 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118363308 (polr1a)
Enzymes [BR:
oke01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118363308 (polr1a)
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
118363308 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
YceG
Motif
Other DBs
NCBI-GeneID:
118363308
NCBI-ProteinID:
XP_035599916
LinkDB
All DBs
Position
30:22779960..22791532
Genome browser
AA seq
1700 aa
AA seq
DB search
MLFGKEVPWRRLEGMTFGMYTAEEIRKLSVKSITNFRFLDNVGNVAPNGLYDLSLGPADS
KEVCSTCMQDFNNCPGHLGHIELPLPVYNPLLFDKLYLLIRGSCLNCHMLSCPRAAIHLL
LNQLKLLDVGALQEVYELEHVLNQFLEGNAQASGVEIQVVLEDYCAHVNKRKTGDDHSSP
IKHICEKKNKLITLFWRVQMNSRKCPHCRSGRSQVRREHNSKLIVTLPAAMYKDGAIKGP
DEEDGMAGKRGYLTPSTARDHIAKLWDKEGFFLKCLFSGLEELESSPSGVYPDLFFLELM
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDSGVIQKLLALLAGEKLKEKELQLEEVQE
ADPSQTDQAFLAGIPGATLTDKLYNTWIRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKK
DGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGVPMVFATKLTYPQPVTPWNVKELRRAV
LNGPNVHPGASMVINEDGSRTILSSTNLTQREAIAKQLLTPCTGQHMMPMKIVNRHIKNG
DVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGR
AEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFSRDQYTELVYRGLTDKV
GRVKLLPPAILKPFPLWTGKQVVSTLLMNVIPGNHIPLNLTGKAKIPSKAWIKESPRCVP
GYKPETMCDSQVIFRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLF
TAYLQLYRGFTMGVEDILVKRGANRQRKQIIKESVTCGTKALQAAFNLPDTVDESEARGR
WQDAHLNPDQRDFNMVDLKFKEVANQVNNDINKVVMPLGLHCSFPENNLQLMVQSGAKGS
TVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYESSPRSGGFVSGRFLTGIKPPEFF
FHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD
VPKTQFLQPRQFPFIQDNYEVIRKSKCLDEVLAKLDPQAATNHFKAIRKWKAKREHLSPR
EGAFLLFSQKKLKKAERQALENLANGRDTATLKLVDRWSSLDQDSRSKYLKKTSHCPEPC
LSLFRPDISFGSVSETFESIVESYLKDIQVKQLPEGSSKNLDAQRLKHLLQLKWQRALCD
PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSSIKTPMMSI
PVLNSKKAIKRVKTLRKKLTRVCLAEVLHKVDVLETLRVKNKQQKDRVFKIIFRFLSPER
YQEDKMLTPHQILHYMENRFFRLLLEAIKKRNTKLASINAVETRKATVRDNDQDVGDSSA
RQESGDGEEESMIVDDVGNEGDADASDAKRRENQEEEVDYESEEGEDAEGEDLVEEKEEP
AEENSEEVPDEVPGDLATEEPGGAGARKRSKQKSTHTQDSMRVNTVLETSSSIEGYSYDS
QQGLWCEVTLILPVSKVHFDLTSLVVAVAQNAVVMETKGITRCLLSEVTKKDGSKELELK
TEGINMHELFNHSEILDVNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPR
HLSLVADYMCFEGVYKPLNRFAIQSNSSPLQQMTFETSYKFLKQATMLGSRDKLVSPSAC
IVVGKVVKGGTGIFDLKQPL
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgggaaagaagtaccatggaggcggctggagggaatgacatttggaatgtac
actgcagaagaaataagaaagttgagtgtcaagagcataaccaacttcagattcctggat
aatgttggtaatgttgcccccaatggcctctatgacctgtcattgggcccagctgattcc
aaagaggtgtgctccacctgtatgcaagacttcaacaactgccctgggcaccttgggcac
atcgagctacccttacccgtatacaacccactcttgtttgataaactgtacctgctgatc
cgagggtcatgtctgaactgccacatgctgtcctgccccagagcagcgatccatctcctg
ctgaaccagctgaagctgttggatgtgggagctctacaggaggtctatgagctggagcat
gtgctgaaccagttcctggaaggcaatgcccaagcttctggggttgagatccaggtggtg
ttagaggactactgtgctcatgtcaacaaacggaagacaggcgacgatcacagctcacca
atcaagcatatctgtgagaagaagaacaagcttataacactcttctggagggtccaaatg
aactccaggaaatgccctcactgcaggagtggccgatcacaagtgcgcagggagcacaac
agcaaactgattgtcaccttgcctgcggctatgtataaagatggtgccatcaagggaccc
gatgaagaagatgggatggctggaaaacgtggatacttgacccctagcacggcacgggat
cacatcgccaaactttgggataaagaaggtttcttcctgaagtgcttgttctctggactg
gaggagttggagagctcacccagtggcgtttaccctgaccttttcttcctggagcttatg
gtggtccctccatgcaggtatcggcccattaaccgtctgggagaccagatgttcactaac
ggccagacggttaacatgcaggcagtgatgaaggacagtggcgttatccagaagctccta
gcacttctagctggagagaagctgaaggaaaaggagttgcagctggaggaggtacaggaa
gccgacccctctcagacagaccaggccttcctggcagggatccccggtgccacactcaca
gataaactctacaacacctggattcggctccagagtcacgtcaatatagtatttgacagt
gacatggacaaactgatgacggagaagtaccctggcattcgtcagatcttagagaagaag
gatggtttgttcaggaagcacatgatgggcaaacgtgtggactatgcagcacgttctgtt
atttgtcctgacatgtacattgggaccaatgagattggagtacccatggtgtttgccacc
aagctgacttacccccaacctgtgacgccttggaatgttaaggagctgaggcgggcagtt
ctgaacgggcccaatgttcaccctggggcctccatggtcattaacgaggacggctcccgc
accatcctgagcagtactaacctcacccagagagaggccatcgccaagcagctcctcaca
ccctgcaccgggcagcacatgatgcccatgaagatagtgaatcgtcacatcaagaatggc
gacgtcctgctcctcaaccggcagccaacactgcatcggccgtccatccaggctcactgc
gcccgcatcctgccaggggagaaagtgttgaggcttcactacgctaactgtaaggcctac
aacgctgactttgatggggatgagatgaatgcccatttccctcagagtgaactgggcagg
gctgaggcctacacacttgtcagcactgaccagcagtaccttgtgcccaaggatgggaag
cctctggcaggtctgatccaggatcacatggtgtcaggcactaggatgaccatccgcggc
tgcttcttctcccgtgaccagtacactgagctggtctaccgaggtctgaccgacaaggtc
ggcagagtcaagctgctgccgcccgccatactcaaaccattccctctctggactgggaaa
caggtggtgtctacactactgatgaacgtcatcccaggaaaccacatccctctgaacctg
acagggaaggccaagatccccagtaaggcctggatcaaggagtctccacgctgtgttcct
ggctacaagcctgaaaccatgtgtgactcccaggtgatcttccgtcagggagagttgcta
gtgggggtgttggacaaggcccactatggcagctcagcatatggcctggtccactgctgc
tacgagctatatggaggagagaccagcggtaaactcctcagctgcctggctcgcctcttc
actgcctacctccagctgtaccgggggttcactatgggtgtggaggatatcttggtgaaa
cgaggagccaacagacagagaaagcagatcataaaagagtctgtcacgtgtgggactaag
gccttgcaggcagcctttaacctgcctgacaccgtggacgagagtgaggctaggggccgc
tggcaggacgcccacctcaacccagaccagagagacttcaacatggtggacctcaagttt
aaggaggtggccaatcaggtcaacaacgacatcaacaaggtggtcatgcccctgggtctc
cactgcagcttccctgagaacaacctccagctgatggtgcagtctggggctaaaggctcc
actgtcaataccatgcagatctcctgtctgctgggtcagattgagctggagggtcgacgt
cctcccctgatgccttctgggaaatctctgccatgcttccagccgtatgaaagttcgccc
cgctctggaggttttgtgtctggcaggttcctgacaggaatcaagcccccggagtttttc
ttccattgcatggctggccgggagggtctggtagatacagctgttaagaccagtcgatca
gggtaccttcagagatgtgtgatcaaacacctggagggcctggtggttcagtatgacctg
actgtgagggacagtgatggcagcgtggtccagtttctctatggagaggatggcctggac
gtccccaagacacagttcctccagccaaggcagtttcccttcatacaggacaactatgag
gtcatcagaaagtccaagtgcttggatgaggtcctggccaaactggaccctcaggctgcc
accaaccatttcaaagccatcaggaagtggaaagccaagagggagcatctttctcccagg
gagggggccttcctgctcttctcccagaagaaactgaagaaggcagagcgccaggctcta
gagaacctggccaatggcagggatactgccactctgaagttggtggatagatggagttct
ctagaccaggacagcagatctaagtacctgaagaagacttcacactgtcctgagccctgc
ctgagcctgttcaggcctgacatttcatttgggtcagtgtcagagacgtttgaaagcatt
gtggagtcctatctaaaggacatccaagtcaagcagttacctgagggaagctcgaagaac
cttgatgcacaaagactaaagcatctgctgcagctgaagtggcagcgagccctgtgtgac
ccaggggaggcagtgggtctgctggctgctcagagcatcggagaaccctccacccagatg
accctcaacactttccattttgccggcaggggggagatgaacgttaccctcggtatccca
aggcttagagaaatattgatgattgccagttccagcatcaagactccgatgatgagtatt
cctgtgttaaacagtaaaaaagccatcaagcgggtgaagacactaaggaagaagctgact
cgcgtgtgtctagctgaggtgttgcacaaagtggatgtcctggagacactccgggtgaag
aacaaacaacagaaggaccgcgtcttcaagatcatcttccgctttctttccccagagcgc
taccaggaagacaagatgctgactccccatcagatcctccactacatggagaacagattc
ttccgcctactactggaggccattaagaagcgcaataccaagctggcctctatcaacgca
gtggaaacacgcaaggctacagtacgagataatgaccaggatgtaggggactcctcagct
agacaggagagtggagatggggaggaggagagcatgattgtagacgatgtggggaatgag
ggagatgctgacgcctcggatgcgaaaaggagagagaatcaggaggaagaagtggattat
gagagtgaggagggagaggatgctgagggagaggacctggtggaggaaaaagaggagccg
gcagaggagaactctgaagaggtgcctgatgaggtgcccggtgacctggccactgaagag
cctggtggtgctggggcaaggaagaggtcgaagcagaaaagcacacacacacaggacagc
atgagggtcaacactgtgctagaaactagttccagcatcgagggctattcctatgacagc
cagcagggtctctggtgtgaggttacgctcatcctgcctgtcagcaaggtgcactttgac
ctgacgtcgctggtggtggccgtggcccaaaatgcagtggtgatggagactaagggcatc
accagatgtctgctcagtgaggtcactaagaaagatggctccaaggagctggagctcaaa
actgagggcatcaacatgcacgagctgtttaaccacagtgaaattcttgatgtgaatcgg
ctgtactccaatgaggtccacgccatggcaaacacgtacggcattgaggtggccctgaga
gtcattgagaaggaaattaaagatgtcttcgctgtctacggtattgaggtggaccccagg
catttatccttggtggcagactacatgtgttttgagggcgtgtacaaacctctcaaccgc
ttcgccattcagtccaactcctctccactgcaacagatgaccttcgagacgagctacaag
ttcctgaagcaggccactatgttgggctcccgtgataagttggtctctccctcagcttgc
atagtggtgggtaaggttgtaaaaggagggactgggatctttgatctgaagcagccattg
taa
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integrated database retrieval system
