Oncorhynchus keta (chum salmon): 118363365
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Entry
118363365 CDS
T09424
Name
(RefSeq) collagen alpha-1(XXIII) chain-like
KO
K24355
collagen type XXIII alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118363365
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118363365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118363365
NCBI-ProteinID:
XP_052344063
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All DBs
Position
30:complement(28305328..28382259)
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AA seq
386 aa
AA seq
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MVFPRYDHGFMSGDQSNFQRRLIKGDQGSPGPRGPPGNTGKDGPRGPAGEQGFPGRDGME
GQAGSPGKPGEDGEAGYAGPQGPPGSKGPAGERGMDGLPGFKGDKGDIGEQGAQGDMGYP
GEKGVPGSTEVIDFNGKLLEAFQAIQTISVRGPPGLPGSPGGKGPKGDMGETGSIGEKGE
KGEMGLSGPGGIDGQKGEMGDSRLEDNLVQMISQPGPPGLPGPPGLPGPPGYMGHHGMSG
PKGEPGDSAKGEKGDIGPAGLRGMDGPQGPPGPTGLVGLPGTKGEKGKSGEPGMDGFPGL
IGEKGSRGDRGDKGDRGTMGKRGLKGGKGEQGPPGLDQPCPVGSNGTKGLSDEGVQSTPP
PLPPSGPEPPCPLGQDGLPIPGCWHK
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggtctttccccgctatgaccatggctttatgtctggtgaccagtccaacttccagaga
cgcttaataaagggtgaccaagggtctcctggccccagaggccctcctggaaatacggga
aaagatgggccccgtggcccggctggagaacagggtttccctggtcgcgatggtatggag
ggccaagcaggttcacctggaaagccaggtgaagatggtgaagcaggatacgcaggacca
cagggacccccagggtcaaagggcccggctggtgagaggggcatggacggactccctggg
tttaagggagacaaaggagatatcggagagcaaggagcccagggagacatgggttaccct
ggtgagaaaggggttccaggctctactgaggtcattgacttcaatgggaagctgctagaa
gccttccaggccatccagaccatcagtgtcaggggcccaccaggattaccagggtcccca
ggtggaaagggtccaaagggagatatgggggagacagggtcaatcggagagaaaggagag
aaaggagagatgggtctctctgggccagggggaatagatggacagaagggagagatggga
gactccaggctggaagataacctggttcagatgatttctcagccgggccccccaggactc
ccaggcccgccaggactccccggacctccagggtacatgggtcaccatggaatgtctggc
cctaagggagagcctggagacagcgctaaaggggaaaagggagacattggacctgctgga
ctgaggggtatggacggtcctcagggtccccctggtcccacaggattggtgggtctccca
ggcacaaaaggagagaagggcaagtccggggagcctggaatggatggtttcccaggcctg
attggtgagaagggatcccggggagacagaggagacaagggtgaccgggggacgatgggg
aagagaggtctgaagggcgggaagggggagcagggtcctcctggactggaccagccctgt
cctgtgggttctaatgggactaaaggactttctgatgaaggggtacagtccacccctcct
cctcttcctccttctggccctgagcccccctgtcctttggggcaagatggactgcccata
ccaggatgttggcacaagtga
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