Oncorhynchus keta (chum salmon): 118363609
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Entry
118363609 CDS
T09424
Name
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oke04990
]
118363609
Domain-containing proteins not elsewhere classified [BR:
oke04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
118363609
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
118363609
NCBI-ProteinID:
XP_052344397
LinkDB
All DBs
Position
30:complement(41412947..41572971)
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AA seq
1434 aa
AA seq
DB search
MASPAADIGQPHQRHLLSESASEPAFLEAQKWIEAVTGRCSGDKDFRGGLENGILLCELL
SAIKPGLVKKINRLPTPIAGLDNLSVFLRGCEELGLKGSQLFDPGDLQDTSTRPKTRVAD
CSRKLTNVLITIYWLGRAANSCISYNGPTLDLKEFEGLLSQMRKEAEETESPQRSIRDSG
YIDSWDSERSDSLSPPRHGREDSFDSLDSLGSRSRQTPSPDVLVTRGIGSDGRGSDSESD
VGPHGGRKLPDVRKDDMLARRTSVSEPRVMVPFNQYLPNKSNASGYMPTPLRRKRGDREG
REEDGGRGGGGGDRKSWSTATSPIGSNRPFSPTELPTLEVPPVVAAIESPSPKLQAQPLP
KPQNQSEEEHRNEEEEKEEEMEGRKEEEGKLSPACTWRQEWTEREEEYERHPYNPPQHSQ
TPTLTHGETAIHLTGTAEQSSTPARSCSEELYRLSSVTTSPMTTSIVVTSPPSAGDSPET
TRKFPPPPLMDREEAGPKKVGLAISLATDTGRNNDMWARHALTSPKHSSTTGPSQFLPVP
AARLTTTLMVACQGRMGKSEVEGREGDKPAVARRPSWLDDDLQPIFSHRAASVSDDPESV
SMIDVRCEEDASLPHHSQVRHELMHNQYNMMKEEEDHWQDDLARWKSRRRSVSQDLIKKE
EERKMMEKLMTGEGGAISQRRKSIKTYREIVEEKERRENELREAYQSARTPEEAALVLHR
YAQRFTISEAVLERLQLPKLLDRSVSEDPTTATSTRLPLTPSFRSPNSTSPEEDPNGPLK
YLRQQSLPAPKFTATVEAQVVGFPQGQSHRPQIQSRTPERSPSIQAASPKSIPLLTPKPY
IQSKGTQMLAGPKPGKVDGLLQVNGDMGNDEVTTPERDGRTSPVRFYPSTATPTASSDPS
DTPPCVATPPPTHSPSPRASQLTAMTTLAQGGTSTAVPPSSVPGEAGPPSRPTSLPSELQ
STESIVEAGGRSAAGPLGEEPNTAAAAVQPSPATDSQRATKEQREVCTNATATRPNATVP
CPVQSEHATQQAQPMTAQVSEPSLELSQSAEEVAALADPGPVRNKPPREAPTTELANSAS
YPPETGNPRLGLRWEFFAPPEGEEPKCGKVPVTQVSSPVVIQAKRGDRWAWDPDEERKRQ
ERWQQEQERMLQEKYQREQEKLKQEWERAQREVEEEERRYHEEERRILEETVAPLTPLSC
NLPSPIRGDAPTPMDPQDTIVRSLADWERKQELLERQGGSTESVEWKRQDNDRSSDISTA
SRDESLKTAVSSISQNSSQTDKLTQSLRNGQRAPPAMALPQPPSKKQHPEVLLDCAKPSQ
QTPSRDRRCGSIETMGPSPLKSPTTCPSDMPPSPNRSVSGKKLCSSCGHPLGKGAAMIIE
TLSLYFHIQCFKCGVCKGQLGDTTTGTDVRIRNGLLNCHQCYIRSRSAGQPTTL
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtcccgctgcagatataggacaaccacaccagcgacatctcctctccgaatcg
gcctccgagcccgcgtttctagaagcgcagaaatggattgaggcggtcacaggcagatgc
tccggtgacaaggacttcaggggaggcctggagaacgggatcctgctgtgcgagttgctg
agtgccatcaaacctggcttggtgaagaaaatcaacagattacccactcccatcgctggc
ctggacaacctgagtgtgttcctgcgtggctgtgaggagctgggactgaagggctctcag
ctgtttgaccccggggacttgcaggacacctcaacacgccccaaaaccagggttgccgac
tgcagcaggaagctgacaaatgttctgattaccatatactggctgggccgggctgccaac
agctgcatttcctacaacgggccaacacttgacctgaaggagttcgaaggcctgctgtca
cagatgcgaaaggaggcggaggaaacggagagcccccaacgcagcatacgggacagcggc
tacattgacagctgggactcggagcgcagcgactcgctctccccgcctcgccacggccga
gaggactccttcgacagcctggactcgctcgggtcacgctccagacagacgccctcgccg
gacgtactggtcacccgcggcatcggcagtgatggccgcggcagcgactcagagtccgac
gtcggaccccacgggggcaggaagctgccggacgtgcgcaaggatgacatgctggcacgg
cggacctcggtgagcgagcccagagtgatggtgcccttcaaccagtacctgcccaacaaa
agcaatgccagtggctacatgcccacaccgctgcgccggaagaggggcgaccgtgagggt
cgggaggaggacggtggccgaggcgggggcgggggcgaccgcaagagctggagtaccgcc
acctcgcccataggaagcaatagacccttcagtccgactgaactcccaaccctagaagta
cctccagttgtagccgctatagagtccccatcccccaagcttcaagcccaaccccttccc
aaaccacagaatcagtcagaagaagaacacaggaacgaggaagaagagaaggaggaagaa
atggaggggaggaaagaggaggaagggaagctgtctccggcatgcacttggaggcaggag
tggacggagagggaggaggaatatgaacgtcacccctacaacccccctcaacactcacag
acccccacactcacccacggggagacggctatacacctgactgggactgctgagcaaagc
agtacccccgcccgctcatgctccgaggaactataccgcctgtcgtctgtgacaaccagc
cccatgacgacctccatcgtcgtgacgagcccccccagcgctggggacagcccggaaaca
accaggaagttccctccccctccccttatggacagggaggaggcaggtccaaagaaggtg
gggttggctatatccctggcgacagacaccgggaggaacaacgacatgtgggctcgccac
gcccttacctcgccaaaacacagcagcactaccggtccaagccagttcctgcctgttcct
gcagccaggttaaccaccacactgatggtcgcctgccagggtcgcatgggcaagtcggag
gttgaaggtcgcgagggcgacaaaccggcggtggcgagacgtccatcttggcttgacgat
gacctccagccaatattcagtcacagagctgctagtgtatcagatgacccagagagtgtg
agtatgattgacgtgcgctgtgaggaggacgccagcttgccgcaccacagccaggtgcgc
cacgagctcatgcacaaccagtacaacatgatgaaggaggaagaggaccactggcaggac
gacctagcccggtggaagagtcgcaggagaagcgtctcccaggacctgatcaagaaggag
gaggagaggaagatgatggagaagctgatgacgggcgagggaggggccatttctcagagg
aggaagagtatcaagacctaccgggagatcgtggaggagaaggaacgtcgtgagaacgag
ctccgcgaggcctaccagtcggcccgcacccctgaggaggcagcgttggtcctccaccgc
tacgcccagcgcttcaccatcagtgaagcggtgctggagcgcctgcaactgcccaagctg
ctggacaggagcgtctctgaagatcccaccactgccaccagcacacgtctccccctcacc
cccagcttccgttctcccaactcaacctccccggaagaagatccaaatggccctctgaag
tacctgaggcagcagtcgctcccggcgcccaagtttaccgctaccgtcgaggcccaagtg
gtggggttcccccagggtcagtctcatcgcccccagattcagtcacgcacgcctgaacga
agcccctctatccaggctgcctcgcctaaatctattcctttgctgacacccaagccttac
atccaatccaagggcacgcagatgctggcgggacccaagccaggcaaggtggacggcttg
ctgcaagtgaacggcgacatgggaaacgatgaggtcaccactccagagagagacggaaga
acctcccctgtacggttctacccttccactgccacgcctacagcctcctctgacccttcc
gacacacccccatgtgtggccactcccccacccacacatagcccctcccccagggcgagc
caattaacagccatgacaactttggcacagggtggcacaagcaccgcagtgccaccttct
tcagtgccaggagaagccggcccacctagccggcccacctcactgccctcggagctgcag
agcacagagagcattgtggaggcgggcggcaggtctgctgcaggcccactgggggaggag
cccaacacggcagcggctgcagtacagccctctccagctacagactcacaacgcgctacc
aaggaacaaagagaagtgtgtacgaatgccacagcgaccagaccgaatgccacagtcccc
tgtcctgttcaatcagagcacgcaacacagcaagctcagccaatgactgcacaggtcagt
gagcccagcctggaattgtctcagagtgcagaggaagttgctgccttggctgatccagga
cctgtcagaaacaaaccaccacgtgaggctcccacaacagagctggctaacagtgccagt
tatccgccagaaaccggcaaccctaggttaggcctacgttgggagttcttcgccccacca
gagggggaggagccgaagtgtggtaaagtgccggtcactcaggtgtcatccccggtagtg
attcaggctaagcggggtgaccgctgggcttgggacccagatgaggaacgaaagcgtcag
gaaaggtggcagcaagagcaggagcgcatgcttcaggagaagtaccagcgtgagcaggag
aagctgaaacaggagtgggagagagcgcaaagagaggtggaagaggaggagaggcggtac
catgaggaggagcgcaggatactagaagagactgtggcccccctgacccccctctcctgc
aacttgccctcacccatccggggtgacgcccccacaccaatggacccccaggacaccatc
gtccggtcgctggccgactgggaacgcaagcaggagctgctggagaggcagggggggagc
acagagagtgtggaatggaaacgacaagacaacgacaggagtagtgacatcagcacagcg
tccagagatgagagcctgaaaacagcagttagctcgatcagccagaacagcagtcagaca
gacaagctgactcagagtctgaggaacggccaaagagcacctcccgccatggccctgccc
cagccccccagcaagaaacaacatccagaggtcttactagactgcgccaaacccagccaa
cagacgccctctcgggacaggaggtgtgggtctattgagaccatggggcccagtccatta
aagtcacccaccacatgcccatccgacatgcctccatctccaaacaggtcagtgagcggt
aagaagctgtgctccagttgcggccaccctctgggcaaaggggcggccatgatcattgag
accctcagcctttacttccacatccagtgctttaagtgtggggtctgtaaggggcagctg
ggtgacaccaccacggggacagacgtgaggattcggaacggcctcctcaactgccaccag
tgctacatccgctcccgctcagccggccagccaaccacattgtga
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