Oncorhynchus keta (chum salmon): 118364460
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Entry
118364460 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118364460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118364460
03036 Chromosome and associated proteins [BR:
oke03036
]
118364460
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118364460
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118364460
PBAF complex
118364460
GBAF(ncBAF) complex
118364460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
Motif
Other DBs
NCBI-GeneID:
118364460
NCBI-ProteinID:
XP_035601905
LinkDB
All DBs
Position
31:complement(12643104..12661969)
Genome browser
AA seq
1097 aa
AA seq
DB search
MATAATAAGGTGLGGPAAGPMGVGIAVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKSFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVHDMEQKQANK
LKDIIKRHQGSISDDKSKATHHIYPSPTQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVEGDVEDPPISEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANTAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEEEE
EEEDLTKDMEDPSPVPSMEEVTLPKNVNPKKDSENTPVKGGAVADLDDLEDDSVVSGGKE
EEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAE
SRPLPXGPPPTPHFNVLADTPSGLTPMHHRPPQIPSGQQMINFPEKGKDKPSDMQNFGLR
NDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLETSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTEPAETEKVDT
DSDSQQPDKAESKDEAEKPSESAEKLAEGQKVKSEMAEPSEREEGASEGGEGKATADKDK
EVAMETSEEDKEKAEQEAMEEEEEERKKLEPDGGEGNIATAAAAALASAATKAKHLAAVE
ERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLK
YAEMKARQQMEQQQANTVAQGPAPHHGPPGPGMHHGPSHHGPPPAMHSGHGPPGPGFHPM
GPHHPQQTGPMGGPGQPMPGRMMPGGPPSGSMPPMMGPRHPGAPNGMYPGPSPVQADGMP
PASVGPQAAAPARVADS
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggtttggggggaccagcagccggccct
atgggcgtcggtattgcggtgggccgtaaaaaggatggaggtccttcctcgaaatactgg
gagagcgcagaaacggtctctcagatcgattcggtgcgccaatggatcgggaaacactac
aaaaagtatgtccaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgcttttggacggagggtcaacaaccctgccctcaccaag
ttacctaccaagagcttcctggacttcaaggcggggggtgctctgtgtcacatcctgggc
tctacctacaagtttaagagcgagcagggctggcgtaggtttgacctgcagaacccctcc
aggatggacaggaatgtagagatgttcttgaatgtagagaaaaccctggttcagaataac
tgcctgactcggccaaccgtattcctggtgcatgacatggagcagaagcaggccaataag
ctgaaggacatcatcaagagacaccagggctccatcagtgacgacaagtctaaggccacc
catcatatctacccctctccaacccagcaggaggatgaggagtggctgcgtccggtcatg
cgtaaggacaagcaggtgctggtacactgggggatgtacccagacagttatgacacctgg
gtgtccaccagcgacgtggaaggggatgtggaggacccacccatctctgagaagccctgg
aaggtgcatgccaagtgggtcctggacacagacgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaacaagaagactgtgagcttccgccagaggatcttcccaaag
gaggaggagtcttcccgtacacccgatcgtaaggagcgcaaggccaacaccgccgggaag
aagaggaggcgctcgccatctcccccgaccaccccagccgagtctcgcaagaagggtggc
aagaaggggaatcctgggtctcactggaagcgtcgtggccaccgtggcgaggaggaggag
gaggaagaggacctgaccaaggacatggaggacccctcgcctgttcccagcatggaggag
gtcactttgcccaagaacgtgaaccctaagaaagatagtgagaacaccccagtgaaggga
ggggcagtggctgacttggatgatctggaggatgactctgtggtctccggaggcaaggag
gaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccagcgaggacaacgtg
accgagcagacccaccacatcatcatccccagctacgcagcctggttcgactacaactgt
atccatgagattgagaggcgtgcactgccagagttcttcaacggcaagaacaagtccaag
tccccagaaatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaacccc
caggagtacctgacctccacctcctgccgcaggaacctaaccggagacgtgtgtgctgtc
atgagggtgcatgcgttcctggagcagtgggggctggtgaactaccaggtggatgctgag
agccggcccctccccnatgggcccccgcccaccccccacttcaacgtgctggctgacacc
ccctctggcctgacgccgatgcaccaccgtcccccacagatcccctctggccagcagatg
atcaacttcccagagaagggcaaagacaagccctctgacatgcagaacttcggcctgcgt
aacgacctctactccaagaagaaccccaagagtaaaggaaccagcggcggccgggagtgg
accgagcaggagactctgctcctattggaggctctggagatgtacaaggacgactggaac
aaggtgtctgagcacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctgcgt
ctgcccatcgaggacccctacctggagacctctgagtcgtccctgggccccctggcctac
cagccggtacccttcagccagtcaggcaaccctgtcatgagcaccgtggccttcctggcc
tccgtggtggatccccgtgtggcctctgccgctgccaaggcagccctggaggagtttagc
cgtgtgcgtgaggaggtgccagcagagctggtggaggcccatgtgaagaaggtgcaggag
gcggcccgcagcacgggcaaggtagaccccgcctatggcctggagagcagcggcatcgca
ggaaccgcccccgaggagcccgagaagaccgagccagcagagaccgagaaggtggacaca
gactccgactcccagcagcctgacaaggctgagtctaaggacgaggcggagaagcccagt
gagtctgctgagaagctggccgagggacagaaggtgaagagcgagatggccgaaccgtct
gaacgggaggagggagcgagtgagggaggagagggcaaggctacagcagacaaagacaag
gaggtggccatggagacctcagaggaggacaaagagaaggcggagcaggaagcgatggaa
gaggaggaagaggagaggaagaagcttgagccggacgggggggaggggaacattgccact
gcagccgccgctgccctcgcctcagctgccaccaaggccaagcacctggcggcagtggag
gagaggaagatcaagtctctggtggctctgctggtggagactcagatgaagaagctggag
atcaagctcagacactttgaggagctggagaccatcatggaccgagagaaagaggctttg
gagttgcagaggcagcagctgctgacagagcgccaggccttccacatggagcagctgaag
tatgctgagatgaaggctcgccagcagatggagcagcagcaggccaacacagtggcccag
ggccccgcgccccaccatggtcccccagggccaggcatgcaccacggaccctcccaccac
ggaccccctcccgccatgcactccggacacggccctcccggacccgggttccaccccatg
ggtccccaccacccgcaacagaccggaccaatgggagggcccggtcaacccatgccagga
cgcatgatgccgggcggccccccctctggcagcatgcctcccatgatgggtccccgccac
cctggagcccccaacggcatgtaccctggcccctcgcctgtacaggctgatggtatgccc
ccagcatctgtgggacctcaagcggcagccccagcacgagttgctgacagctaa
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integrated database retrieval system
