KEGG   Oncorhynchus keta (chum salmon): 118364874
Entry
118364874         CDS       T09424                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    118364874
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oke03021]
    118364874
   03036 Chromosome and associated proteins [BR:oke03036]
    118364874
Transcription machinery [BR:oke03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     118364874
   Coactivators
    SAGA/TFTC/STAGA complex
     118364874
Chromosome and associated proteins [BR:oke03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     118364874
    STAGA complex
     118364874
    TFTC complex
     118364874
    SAGA complex
     118364874
    SLIK complex
     118364874
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I TFIID_NTD2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_Aladin NBCH_WD40 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_HPS5 RMC1_N Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_Vps41 Tricorn_2nd Beta-prop_VPS8 PEP5_VPS11_N Beta-prop_WDR75_2nd WD40_like PROPPIN WD_LRWD1 Beta-prop_ELP1_1st
Other DBs
NCBI-GeneID: 118364874
NCBI-ProteinID: XP_035602550
LinkDB
Position
32:complement(5019726..5024913)
AA seq 607 aa
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQAESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAALPWGQEVSCVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVNANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHVQVEVTSSPRTDYQLYGMTGAGAAGAAITAPNSTSSWSGADGPEREE
AAGVEVPTGIPQSEVALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNAAEVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFSSS
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADSSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggatactgaaagttccctgaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcaggcagagtcggggtgtgcaaacattgtctctgctgcc
ccttgtcaagctgaccctcaacagtacgagacccaattttccagactacgcaattttctc
tcagaagcggcgttgccatggggccaggaggtgagctgcgtcctgtacccgctcttcgtt
tatctccacctggacatggtgcgctgcagcttgaagggggcggtggatggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
cacgtcctcacccagcaggatgtcaacgccaaccctaagctcctggccttcctcgaccac
aaatacgtggtgaatctgacggagccggcctacagttacttgttacggtatctgcagagt
gaagacaacagtaccctctgtagggccctcagcacccacgtccaggtagaggtcacctcc
tcaccacgcaccgactaccaactgtacgggatgacgggagcaggagccgccggggctgcc
atcacggcccccaactctacctcctcgtggtcgggagcggatggccctgagcgagaggag
gcggcgggggtggaagtccccacagggatcccgcagagcgaggtggccctggaggcactg
caggactgcattaagaaagtgcgtgaggggccaccatcgctcaccaccgtgtgcttctac
gccttccagcacacggagcagctgctgaacgcggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagttcggccgtcaagctatggagccttagggccaggaaactg
aaggccaggccacaccgggccgacgtgtcacacatccgcttagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacggccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctagggagcttcaccaacacggccctctaccagggc
catgcctaccccgtctgggacgtggacgtcagcccctgcagcctctacttttccagcagc
tcccacgaccgcactgcccgcctctggaccttctccaggacataccccctgaggctctac
gccggccacctagcagacgtggactgtgtcaagttccaccccaactcaaactacctagcc
acaggctccacggataaaactgtccgcctctggagtacccagcagggggcgtcggtgcgc
ctgttcacaggccaccgcggccctgtgttgtctgtagctttcgcgcccaatgggaagtac
ctggcgtcggcgggcgaggaccagcgagtgaagctgtgggacctggcctcaggcgctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggataactcagtcagggtgtgggacatccgaaactcc
catgggacgacccacgcggatagttcgtccagcgagctggtggggctctacacgggaaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaacg
gcgcaagagaaacatggacagtag

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