Oncorhynchus keta (chum salmon): 118364982
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Entry
118364982 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118364982
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
118364982
3'-5' decay
Other 3'-5' decay factors
118364982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
zf-CCCH
UvrD-helicase
ResIII
PAM2
AAA_22
zf_CCCH_4
AAA_16
PhoH
Mov-10_helical
zf-CCCH_4
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
118364982
NCBI-ProteinID:
XP_052346121
LinkDB
All DBs
Position
32:complement(8376366..8435280)
Genome browser
AA seq
1995 aa
AA seq
DB search
MADRRAEKSCEEASGSLARREYEVAVSHCTDALLALGPRPPIPGTPTSNPPNDTVTPLRS
RALLYRIAALLQLKNYDQADEDCKHVLAEELAKGDGSFQASLRCMLLDGSLHEVAGLLSK
SLFGEPLNGIVTKDLTRLKMLLSEIEAIRSEMATEYTDDNEEVRDGWQFRPPPRGVTSSE
EYTLCKRFLEQGLCRYGAQCTSAHSREELMEWQKRYASRLIRLKQQQESKHFTENYMEAL
IEKWMNSLSPEKVLSDYLDGVNVEHSSNLSVTVTTKKSAHSWTFSLFCKPFAHRPHFSIT
AVSVGDAGAQRLQAAAEGCQEWTAGEEALAADNGMDHCVYTVVVGFSTEIFGTFRQTIVF
DFGSEPVLMQRIMVDAASIEDLEHLMQARQQLLMTAKRWDPSCKTIVEFSPNETVDLDRS
LLARYQIPLSADQLFTQSVLDKTLTRDNYQARLHDLLYIEEIAQYKEVSKFNIKVNLQLV
TSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVLLLPLARQEWCSQ
PPGVKERVYEACIEEKTKDYIFLRICKDCCEELGLIPDRELQVELQFQLNRLPLCEMHYA
LDRIKDNGILFPDASLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAITTPLTIPLPPVLI
IGPYGTGKTFTLAQAVKHILRQDDSRVLICTHSNSAADLYIKDYLHPYVEAGNAHARPLR
VYFRNRWVKTVHPLVQQYCLISNTQYTFQMPEREDILRHRVVVVTLSTSQYLCQLDLEPG
LFSHILLDEAAQAMECETIMPFALASKSTRIVLAGDHMQLSPFVYSEFSRERNLHVSLLD
RLYEHYPAEFPCRILLCENYRSHEAIISYTSELFYDGKLMASGKQPSHKDFYPLTFFTAR
GEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVVSPYADQVFRIRAE
LRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYG
FLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEKFISICHENASLHGITFEQIK
AQLEALELKKTYVLNPLAPEFIPRALRPQPAQHPHHHHHHHPHPQGHTASKQPGPQQQQQ
SPPKGKGQHANHTEHFPPEGFVQPNPAVLMGNPIRAFTPPLGGTPGGMGKSPSPVQRIDP
HTGASILYVPAVYGANMVMSMPLPSVPIQLPWPGYQNRFAMDPRIMNHQAAMAYNLNLLQ
AQNRGSPIPYSGVAHSSPLGMGQQTSPDKELQADSTRNGKMDGSAKLEQSRLQTPERKTS
EMKDKPGECDPGGGRTLDSQTDGLGFPNAMLHRKDNSSQRPLNYHLAPPNPAFAPHPVGR
AFPPQYPGVSRLPFRVPSQHPGGGPAMGQSNQHHSAQLSPAYDSGRHNPSFFGGVMASHR
VVPETEEEGPEDMGNSMRSQMGHQGAHHPALSQPSRVNSFGEENQEGGLGDGMDPLALEA
LSQQARLGQWGEPGPFLQGGVAFPLPQQLAHLAQPGLARFPPQLLARANWRMSAGMEDEA
GGPPFTRFPGLLREMPPQDQPDPRDLAEMQPPPQSRLLQYRQVQSRSPGDPSSPSSATSN
HTGPFPPGPYPGRDPTSHELDLLNNPGLQQHPGNQLYNPNAYPHQLGHSTTPPPQVKYLL
QEAQWPHGGAGVAQNHMLAQGQGFPYGLPVMAHPSRQEQVHLMQLHHQHHQQQQHHQQQQ
QQGQGPGQEPYHPLSPRTTGATALHNVEEYEPRGPGRPLYQRRISSSYPDEGSPANAAVM
AQQQPQPCPADPQEHPHQHPHPHQHTHQHPHAPYGYPPPELWPGNGGGPGPFQNIPCNGA
STLVQHQHRDLLVASKALRQAAEEQMKAEAAAAVAAAQPPAHSLQHLGQFPPLMPNSKQQ
QPPQQQAPPEPGQGPGGPQNPGKPPTMSYASALRAPPKPRARPEQVKKHSDPLSLLQELS
IGSSNGSNGYYSYFK
NT seq
5988 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagccagcggatcgttagccaggcgg
gagtacgaggtggcggtgagccactgcacagatgcgctgctggccctcggcccccggccc
cccatccctggaacccccacatccaacccccccaacgacacggttacccccctccgcagc
cgcgccctgctctacaggatagccgccctgctacagctgaaaaactatgatcaagcagat
gaagactgcaaacatgttctggccgaggagctggccaagggagacgggtcgtttcaggcc
agcctgcgctgcatgctgctggacggcagcctgcacgaagtggctggcctcctctccaag
tccctgtttggggagcctctgaatggcatcgtcacaaaggacttaactagattaaaaatg
cttctctcagaaattgaagccattcgtagtgaaatggctacagaatacacagacgacaac
gaggaagtacgggatggatggcagtttcgccccccgcctagaggagttaccagcagtgag
gagtacacgctgtgtaaaaggttcctggagcagggcctgtgtcgctacggtgcccagtgc
acgtcggcccactcccgggaggagctgatggagtggcagaagcgctacgcctcgcgcctc
atccgcctcaagcagcagcaggagagcaagcacttcaccgagaactacatggaggcgctc
atcgagaagtggatgaactctctctcccctgagaaagtgctgagtgactatttggacggc
gtcaacgtggaacacagctccaacctctccgtaactgtcaccaccaagaaatcagctcac
tcctggaccttctccctgttctgcaagccttttgcccaccgaccccacttttccatcacg
gctgtgtcggttggcgatgccggcgcccagcggctgcaggcggcggccgagggctgccag
gagtggacggcgggcgaggaggcgctggcggccgacaacggcatggaccactgcgtctac
acggtggtggtgggcttcagcaccgagatcttcggcaccttccgccagaccatagtcttc
gactttggctcggagcccgtgctgatgcagcgcatcatggtggacgccgcctccatagaa
gacctggagcacctaatgcaagccaggcagcagctcctgatgacggccaagcgctgggac
ccgtcctgcaagacaatcgtggagttcagccccaacgagacggttgacctggaccgcagc
ctgctggctcgctaccagatccctctgtcggccgaccagctcttcacccagtcggtcctg
gacaagaccctgacccgggacaactaccaggcccgcctgcacgacctgctctacatcgag
gagatcgcccagtacaaagaagtcagcaagttcaatatcaaagtcaacctccagctggtc
accagcttcatgctgacgggcatctccggtggcgccaagtacgcccagaacgggcagctc
ttcgctcgcttcaagctgactgagacgctgtcggaggacacgctggcgggccgccttgtc
atgaccaaggtgaactctgtcttgctgttgcccctggcccgccaggagtggtgtagccag
ccccctggtgtcaaggagcgggtctacgaggcctgcatcgaagagaagaccaaggactac
atcttcctgcggatatgcaaggactgctgcgaggagctggggttgatacctgacagggaa
ctgcaggtggagctgcagtttcagttgaaccgcctgcccctgtgtgagatgcactatgct
ctggaccgcatcaaagacaacggcatcctgttcccagacgccagccttacacccaccatc
ccctggagccccaacaggcagtgggacgagcagctggacccgcgtctcaacgccaagcag
aaggaggccatcctggccatcaccacgcctctcaccatccccctgccccctgtgctcatc
atcgggccctacggcacgggcaagaccttcaccctggcacaggctgtcaagcacatcctc
aggcaggacgacagcagggtcctcatttgcacccattccaacagtgcagctgacctgtac
ataaaggactaccttcatccatacgtagaagcgggcaacgcgcacgcaagacctctcagg
gtttacttcaggaaccgctgggtgaagactgtccacccgttggtgcagcagtactgtttg
atctctaacacacagtacactttccagatgcccgagagggaggacatcctcaggcaccgc
gtggtggtggtcaccctcagcacgtcccagtacctctgccagctggacctggagccaggg
ctcttctcccacatcctattggacgaggcggcccaggccatggagtgtgagaccatcatg
cctttcgcgctggccagcaaaagcacccgcatcgtgctggctggagaccacatgcagctc
agtccgtttgtgtacagcgagttttctcgagagcgcaacctgcatgtgtcgctgttggac
cggctgtacgagcactacccagccgagttcccctgccgcatcctgctctgtgaaaactac
cgctcccacgaagcgatcatcagctacacgtcagaactgttctacgacgggaagctgatg
gccagcgggaagcagccgtctcacaaggacttctacccgctgaccttcttcacggcgcgc
ggcgaggacgtccaggagaagaacagcacggcctactacaacaacgcagaggtgtttgag
atcgtggagcgggtggaggagatgcgcaagaagtggccggtggcgtggggcaagctggac
gagggcagcattggcgtggtgtcgccctacgctgaccaggtattccgcatccgcgccgag
ctccgaaagaagaggatgcacgaggtcagcgtggagagggtgctcaacgtccaaggtaag
cagttccgggtgctcttcctgagcacagtgcgcacgcggcacacctgcaagcacaaacag
acggctatcaagcgcaaggagcagctggtggaggactctacagaggacctggactacggc
ttcctgtccaactacaagctgctcaacacagccatcactcgcgcccagtccctggtggcc
gtggtgggagaccccatagcgctctgctcggtgggccgctgcagaaagttctgggagaag
ttcatctccatctgccacgagaacgccagcctgcacggcatcacctttgagcagatcaag
gcccagctggaggcccttgagctcaagaagacctacgtgctcaacccgctggcgcccgag
ttcatcccccgcgccctgcggccccagccggcccagcacccccatcatcaccatcaccat
cacccacacccccagggacacacggccagcaagcagcccgggccccagcagcaacagcag
tctcctccgaaggggaaaggtcaacatgcgaaccacacggagcacttcccacctgaagga
tttgttcaacccaaccctgcggtgttgatgggcaaccccatccgggcattcacgccgccc
ctggggggcacccctggcggcatgggcaagtctcccagtcctgtgcagaggatagacccc
cacacgggcgccagcatactctacgtgcccgccgtctacggggccaacatggtcatgtcc
atgccactgccctctgtccccatccagttgccatggcccggctaccagaaccgctttgcc
atggacccacgcatcatgaaccaccaggcggccatggcctacaacctgaacctcctgcag
gcccagaaccggggctcgcccatcccctacagcggagtcgcacactcttcccccttgggc
atgggccagcagactagtcccgacaaggagcttcaggctgattccaccagaaacggtaaa
atggacgggagtgcaaagttggagcagagccggctacagacaccagagaggaagacctcg
gagatgaaggacaaaccgggagagtgtgatccgggcggtggtcggactctggactctcag
acagatggactgggcttccccaacgccatgctccaccgcaaggacaactcaagccaaaga
cccctcaactaccacctggcgccccccaacccggcctttgccccccatcccgtgggtcgg
gccttccccccacagtaccccggcgtgtccaggctcccctttagggtgccgtcccagcac
ccaggtgggggcccggccatgggccagtctaaccagcatcactcggcccagctatcacca
gcctacgacagtggcaggcacaatccctcgttctttggtggggtcatggcctcccacagg
gttgtgccagagactgaagaggaggggccggaggacatggggaattccatgaggtcccag
atgggccaccaaggggcgcaccacccagccctgtcgcagcccagccgagttaacagcttc
ggggaggagaaccaggaaggaggcctgggagatgggatggaccccctagctctggaggcc
ctgagccagcaggcgcggctgggccagtggggtgagcccgggcccttcctccagggcggt
gtggccttccctctgccccagcagctggcccatctggcccagcccggcctagcacgcttc
cctcctcagctgctggcacgggccaactggaggatgagcgccggtatggaggacgaggct
ggcggaccgcctttcaccaggttcccaggcctcctgcgagagatgccccctcaggatcag
cccgatcccagggacctggcagagatgcagccccctccccagtcccgcctgctccaatac
cgccaggtccagtcccgctccccaggagacccctcctccccctcgtctgcaacctccaac
cacaccggccccttcccccctggcccctatcctggccgagaccctaccagccacgagctg
gacctcctcaataacccgggtctccagcagcacccggggaaccagctctacaaccccaac
gcctacccccaccagctgggccactctactaccccgcccccgcaggtcaagtacctcctc
caggaggcccagtggcctcacggcggagctggcgttgctcagaaccacatgctggcccag
ggccagggcttcccctacgggctgcccgtcatggcccaccccagtagacaggagcaggtc
cacctcatgcagctccaccaccagcaccaccagcagcagcagcaccaccaacagcagcag
cagcagggtcaaggcccaggccaggagccctaccaccccctctcccccagaacaacaggt
gccaccgcccttcacaatgtagaagagtatgaacccaggggtcccgggcggcccctctac
cagcggcggatctcctccagctacccagacgagggatcccccgccaacgccgccgttatg
gcccagcagcagccacagccctgcccggcagacccccaggagcacccccaccaacaccct
cacccccaccaacacactcaccaacacccccacgccccctacggctaccccccgcccgag
ctgtggcccggcaacgggggtggccccggcccgttccagaacattccatgcaacggagcc
agcacactcgttcaacaccaacaccgggatctcctagtagcttccaaggccctgcggcag
gcagcagaggagcagatgaaggctgaagcggcagcagcagtagctgcggcccagcctccc
gcccactccctccagcacctcggacagttcccccctctcatgcccaacagcaagcagcag
cagccgccgcagcagcaagcccccccagagcccggccagggccccgggggcccccaaaac
cctggaaaaccccccaccatgtcctacgccagtgccctccgcgccccacccaaacccaga
gctcgccccgaacaggtcaaaaagcacagcgacccactttccctactccaagagctcagc
ataggaagttcaaatggtagcaacggatactattcctattttaaatga
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