Oncorhynchus keta (chum salmon): 118365088
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Entry
118365088 CDS
T09424
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X3
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118365088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118365088
03041 Spliceosome [BR:
oke03041
]
118365088
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118365088
Spliceosome [BR:
oke03041
]
Complex B
Other components
Prp19-related factors
118365088
Complex C
118365088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_16
TPR_15
ARM_TT21
ARM_TT21_C
NRDE-2
SNAP
TPR_1
UTP6_C
Motif
Other DBs
NCBI-GeneID:
118365088
NCBI-ProteinID:
XP_035602923
LinkDB
All DBs
Position
32:complement(14957597..14980620)
Genome browser
AA seq
848 aa
AA seq
DB search
MASLNGKPDVIFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNCTMSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCIMEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCGKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGKDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNATISDLAPGQLGLDDMKLLEQQAQQLAAEAEQDK
PKLKEKILFVRSDTSRSELAELAKQANPDEIDIDDEDGDDEDQGPEEVQLEQKSVPTAVF
GGLKEGED
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctctaaatgggaaaccggacgtaatatttgaggaagatgacctgccttacgag
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgttacatcgagttcaaa
caaaactgcacaatgtccatcctcaacatgatatatgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactacctgagagagagacggaaacaggtcaaagggaag
tgcatcatggagccagcctacgaggagatcaacaactgccatgaaagagcactggttttc
atgcacaagatgccgaggatatggctggactactgccagttcctggtgtctcagtgtaag
atcaccaggagcagacgcacatttgaccgagcgctccgagcccttcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctgcccctgcctgagaccgcc
atccgtgtctaccgcaggtacctcaagctgtccccagagaatgcggaggagtacatagat
tacctgcgttcctgtggcaagctggatgaagcagcagtacgtctggcagccgttgtcaac
gatgagagctttgtgtccaaggagggaaagtctaactaccagctatggcacgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt
ggaggcctcactcgcttcacagaccagctgggcaaactctggtgctccctggctgactac
tacatccgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccatcttgacg
gtggtgacggtaagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc
atgatcgctgccaagatggagactacctcagagttggggaaagatgaagaagaggacata
gacctggaactgcgtttggcccgctttgagcagctgatcgcccgcaggcccctcctgctg
aacagtgtgctgctgagacagaatccccacaacgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagacagtg
gaccctatgaaggctactgggaaacccagctctctctgggtctccttcgccaagttctac
gaggagaacgagcagctagacgacgcgcggaccatctttgagaaagccaccaaggtgaac
tataagcaggttgacgacctggctggcgtgtggtgtgaatacggagagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaag
aaggcagagtactttgacgtgtcagagcccgtgcagaacagagtgtacaagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaacattccagtccaccaaggcg
gtgtacgaccgcatcattgacctgcgcatagccacgccccagataatcatcaactacgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcgtacgagcgtggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaaattcatc
gaccgctacgggggcaaaaagctggagagggcccgggacctgtttgagcaggcgctggat
ggctgtccagccaagttcgccaagaccatctacctgctgtacgccaaactggaagaggag
tttgggttggcgcgtcacgccatggcggtgtacgagagagctacgcaggcggtggacaac
acggagaggcatcacatgttcaacatatacatcaagagggctgcagagatctacggtgtc
acctacaccagagcgatctaccagaaagccatcgaggtgcttccagacgaacactccagg
gacatgtgcctgcgcttcgctgacatggagagcaaactgggcgagatcgaccggggcaga
gccatatactcctattgctctcagatctgtgacccacggatgacggccacgttctggcag
acgtggaaggagtttgagatccgccatgggaacgaagacactatccgggagatgctgagg
atcaagcgcagcgtccaggccacgtacaacacacaggtcaacttcatgtcctcacagatg
atgaaggccaccaccaacgccaccatctcagaccttgccccgggtcagctggggctggat
gatatgaagctgttggagcagcaggcccaacagctggccgccgaggctgaacaggacaaa
cccaaactcaaagagaagatcctcttcgtcaggagtgacacatctcgcagtgagctggct
gaactggccaaacaagccaaccccgatgagattgatattgatgatgaggatggtgatgat
gaagaccagggcccagaggaggtgcagctggaacagaaaagtgtccccactgctgtcttt
ggagggctgaaagaaggagaagattga
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