Oncorhynchus keta (chum salmon): 118365264
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Entry
118365264 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
118365264
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oke04054
]
118365264
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118365264
Pattern recognition receptors [BR:
oke04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
118365264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
Lambda_Bor
Motif
Other DBs
NCBI-GeneID:
118365264
NCBI-ProteinID:
XP_052346839
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All DBs
Position
32:complement(21172921..21179152)
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AA seq
701 aa
AA seq
DB search
MDHGHCLLLIQNIELLQKHLTSRMADFGLYEYQEEVVQRALRGENIIIWLPTGGGKTRAA
VYVAKNHLENNPGAKVAVLVNMVHLVEQHYNKEFKPYLGRDYSLVSISGDCDQKDFFGCE
VKNSDLVICTAQILENALTNQEEGKHVELSQFTLLIIDECHHTHKEGVYNKIMGRYVAQK
LKXERRLPQILGLTASPGTGGAKSIKGAVDHVLQICANLDSVIVSSKVYAPELKKKVPRP
RKRFDIVDRRPQDPFGDHLKFMMQFIHDFMALGPDFPAKEFGTQEYEADVVILEKKGVTD
RNRLLAQCALHLRQYNNALLINDTVRMVDAFRVLESYYSTKTSTATDGTNFFLLGLYQEN
EVELRKLAGDARFENPKMGKLQNTLLEQFDQGEYSRGILFSKTRKSTHCLYDWVSNNPAL
QRAGIRAAILTGAGNGTNYMTQNEQKDTIRNFRLGSLNLLISTSVAEEGLDIPECNLVVR
YGLLTNEIAQQQASGRARASDSVYSVVAQAGGAEVRRELLNECLEDLTGRAIGEVQRMEP
REFQMKITDLQTEAMLTRQLAEQLKIKKRSRFSAATVQLSCRGCFVPVAFGNDIKVIENA
HHVNINPDFEKYYKTGEQPALKTFEDWEPGRVISCAACGKQWGREMVYKEIALLPILAIG
NFAMETPEGRKLANKWKKVEFTVEEFNFSMYCQNKFPNMLD
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggaccatggacattgtctgctgctgatccaaaacatagagctgcttcagaaacacttg
accagtaggatggcagactttgggctgtatgagtaccaggaggaagtggttcaacgggct
ctacggggggagaacatcatcatctggctgcccaccggaggaggaaagacacgggctgct
gtgtatgtggccaaaaatcatctggagaataaccctggagcaaaggtggctgtgctggtc
aacatggttcatttggttgaacaacactacaacaaagagttcaaaccctacctgggtcgg
gactatagcctggtgtctatcagtggggactgtgaccagaaagacttctttggctgcgag
gtcaagaactctgacctggtcatctgtacagcacagatactggagaatgccctgaccaac
caggaggagggaaaacatgtcgagctttcacagttcactctgctgatcattgatgagtgc
caccacactcataaggagggtgtctacaacaagataatggggcgctacgtggcacagaag
ctgaagngggagagacggctgccgcagatcctgggcctcactgcctctcctgggacaggg
ggagccaagagcatcaaaggagctgtggaccatgtgctgcagatttgtgccaacctggac
tcagtgattgtgtcctccaaagtgtatgcccctgagctgaagaaaaaggtccccagaccc
aggaaaaggtttgacatcgttgacagaagacctcaggacccatttggggatcacctgaag
ttcatgatgcagtttatccatgacttcatggccttagggcctgactttcctgccaaggag
tttggcacgcaggagtacgaggcagatgtggtgattctggagaagaagggtgtgacagac
aggaacagactgctggcccagtgtgctctccacctgcgtcagtacaacaacgccctgctc
atcaacgacactgtgcgcatggtggatgcctttagggtcctggagtcctactatagtacc
aagacctccaccgccacggatggaaccaacttcttcctgcttgggctctaccaggagaac
gaggtggagctgaggaaactggcaggcgatgcccggtttgaaaaccctaagatggggaag
cttcagaacaccctgctggagcagtttgaccagggtgaatactccagaggcatcctgttc
tccaagacccgtaaaagcacccactgcttgtatgactgggtgtccaacaacccagcactg
cagcgtgctggtatcagggcagccattctgactggcgctggcaatggcaccaattacatg
acccagaatgagcagaaggacacaatccgcaacttccgcctgggctccctcaacctcctg
atctccaccagcgtagccgaggagggcctggacatcccagaatgcaacctggttgtgcgc
tacgggctgctgaccaatgagatcgcacaacagcaggccagtggccgggctcgggcgagt
gacagcgtttactctgtggtggcccaggcggggggggcggaggtgcgtcgggaactcctc
aatgaatgtctggaggacttgactggcagggccatcggcgaagtgcagaggatggagccc
agggagttccaaatgaagatcactgatctccagacagaagccatgttgaccagacagttg
gcagaacagttgaagatcaagaagaggagtcgtttcagtgctgctacggttcagctctcg
tgtcgaggctgttttgtgcccgtggccttcggcaatgacattaaagtaattgaaaatgca
caccatgtcaacatcaacccggactttgagaagtactataagaccggtgagcagcccgcg
ctgaagactttcgaggactgggagccaggccgtgtgatcagctgtgctgcctgtggcaag
caatggggaagggaaatggtatataaggagattgccctgctgcccattctggccatcggg
aactttgccatggagactccggagggaagaaaattagccaacaagtggaagaaagttgag
tttacagtggaggagtttaacttcagcatgtactgtcaaaacaaattccctaacatgttg
gattga
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