Oncorhynchus keta (chum salmon): 118365579
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Entry
118365579 CDS
T09424
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118365579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118365579
03009 Ribosome biogenesis [BR:
oke03009
]
118365579
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118365579
Spliceosome [BR:
oke03041
]
Complex A
U1 snRNP components
U1 related factors
118365579
Complex B
118365579
Ribosome biogenesis [BR:
oke03009
]
Eukaryotic type
Pre-60S particles
Helicases
118365579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118365579
NCBI-ProteinID:
XP_035603799
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All DBs
Position
32:29581952..29587452
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AA seq
616 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGGKFGNPGDRLRKKHWNLDELSKFEKNF
YQEHPDVNRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPT
PIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTN
MRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYV
QINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEIT
RRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRG
GHSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGAS
GFDKSGNGFSSYGSNGQSNYGTSQAGAFPTQNFQAPQFSANQGGAQNGMSHQQFPFTQQQ
APQPMVPYPMPPQFPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggtagagatagaggttatggtagtggaccacct
cgttttggaggcggcggaagaggaggaggaggtggtggggggaagtttggtaatcccggt
gatagactgcgcaagaagcattggaaccttgacgaactctctaaatttgaaaagaacttt
taccaagaacacccggatgttaatcggagatctccgcaagaggttgcacagtacagaagt
actaaagctgttactgtgaaggggagggactgccctaatccaattatgaagttccatgaa
gccagttttccaacatacgtgatggatgtcattaacaaagcaggctggtcagaaccaaca
ccgatccaagcacagggttggccactggcattgagtggcaaggacatggttggcattgca
cagacaggctctgggaaaactctctcttacttgttgcctgcaatcgtgcacattaaccac
cagcctttcctggaacgtggagatggccctatttgcttagtgcttgcccctacccgtgaa
ctggctcagcaggtccagcaggtggcggcagagtatggcagagcttctcgcctgaagtct
gtctgcgtttatgggggcgcgcccaaagggccacagctccgtgacctggatagaggtgtg
gagatttgcattgccacacctggcagacttattgacttcctggaggcgggaaagactaac
atgcgcagatgcacttacctggtcctggatgaggctgaccgaatgctcgacatgggtttc
gaaccacaaatccgaaagattgtggaccaaatcagacctgaccgacagacgctgatgtgg
agtgccacctggcccaaggaggtgcgccagctggcagaggacttcctgaaggactacgtc
cagatcaatgtgggagctctgcagctgagtgccaaccacaacatcttgcagattgtggat
gtttgcaatgatggcgagaaggaagacaagctcctccgcctacttgaggagatcatgagt
gagaaggagaacaagaccataatctttacagagaccaagaggcgatgtgatgagatcact
aggcggatgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcag
gagagggactgggtgctcaatgagttcaagtttggaaaggcgccaattctcattgccaca
gacgtcgcctccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactac
cccaacaactctgaggactatattcaccgcatcggcagaactgcccggagccaaaagact
ggcacagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgttgct
gtgctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagagga
ggtcattcaaggggaggcagaggtggtagtggatttagggatgaccgtcgggacaggtac
tcctccgggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggtttt
gacagtggaccaaagaaagtctttggcacaaattcacagagtggaggttatggggcaagt
ggctttgacaaaagcggcaatggttttagcagctacggcagcaacggccagtcaaactat
ggtaccagccaggccggggcgttcccaacgcagaacttccaggccccacagtttagtgcc
aaccaaggaggtgcacagaatggcatgagccatcaacagttccccttcacgcagcaacaa
gcaccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
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