Oncorhynchus keta (chum salmon): 118366004
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Entry
118366004 CDS
T09424
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03440
Homologous recombination
oke03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118366004 (brca2)
03460 Fanconi anemia pathway
118366004 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oke04121
]
118366004 (brca2)
03036 Chromosome and associated proteins [BR:
oke03036
]
118366004 (brca2)
03400 DNA repair and recombination proteins [BR:
oke03400
]
118366004 (brca2)
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
118366004 (brca2)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
118366004 (brca2)
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
118366004 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
118366004 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA-2_OB3
BRCA2
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
118366004
NCBI-ProteinID:
XP_035604174
LinkDB
All DBs
Position
33:91948..124893
Genome browser
AA seq
2846 aa
AA seq
DB search
MDIRRNMFDAFKDQIWEDLGPLNPNWFEELTAKASSRDWGDTEKDNPSTAISCGQDGSFK
TPLGKCPLDGDMFSTPKIFRQRRPQSPETLIEDAVFFPDQGTSATEKMDTSPCLFGKSID
SGTPSKSYRTRLHGDSFGLLDTPKHSTQAHSTKRISESLGAQLDPDMSWTSSLNTPVMSP
TIILTKSEEHSLMCPVRIATEEQVMFVRKLFPSAKESRSTMLSPEQNDRPLCQHNGLDSH
LPGVIDISPGFQDTLPGDSGSHWKQTLPDAIEDGEISSTMTGVVDGAEDVISIFFSNKTL
ALQQVKTNERIKRKPSGATKEHVPTSTTEHDKVSSERAEEYQHTRETSEPLESRTDMKSG
DLVTSQWTLINVPDFSGYDMDSFHHEGSSSTKHIIPHGGKGETFRDFTGSQQEATVQVES
ALSRRTLPCTSQPEGSQLTGSVVESSLEHTFPRKTRTFVYCVQNPLLSVQEKYVTQMLPA
SPGTAPRGENQNMKQSKTIPDEAEVNNLNKTALDGKKPLVQKSAAEENIVSQAPSKDPDL
DMSQLCRVFAQDFSQVIDYSQPCSKRADAIKNGFSASACLSAMRLRNRKLLNRLEWGQEP
EHFNSGISDEMHIPGSQFSNSANTSRMKSTVCDSGFPPSTLSDVTQTESSNVHPSSEKSY
GNQSSRGFKTGNNWIISLPPEAIKKAKASLDYLIEENMTDVVTAASEVKPVLSCVTGSRL
STEVKFISPLNIAKRSKQTSVKLNGQVHVPTHQSINVSVSSHPGSGFKMASNKKIHFFSA
NLEKDEDLFKEIEDEIPAVNIPEISLPEEGNMSCGLELVDGSHLPPLPYTRQRSVNSQGP
LTASQRADVSELCSLLEAADSQFEFTQFKPAKLNFYVPDGSPPRQSEKELDPDFLTGIDF
DDSFNSDVEKQSVKMVTPDKKTTISHCKEICQVTTKIKSSGASSSNSTEKSKEHVIHRRV
LYIPSYSSENIADHSFGLLTKSTNKNHLLDMDTNTSGMECERKNLPKLDVGFKTAGGNAM
IVSEKCLSKARALFADFEEKNCAPKCAVKNTEQVEISPVQYRGEVDTNVYSNVTHFHGPE
KKVDLKELHDEYIDKIKVDFTHSHTHGDGGFQTASGKGVTISAKALQKTNAVFKDCDAKE
SSGCASKLSKTSVVSETGSNNFERNNCGFSTARGKRLDVPAKSLLTLLNDCDELENSKPG
KIPSLNAKIPSQNIQQKSDCDFKKPSIKAASISARIPFTAKTQFDSGMSHDVLGAKSKML
EPENSQTHAKDPLKNGCGFSTASGKIVSVSEGALLKAQALLSECNVDGEELSKSKKKIRV
DLHNPTQKHSGFKTAGVKEVTVSPKAHKQAQALFNNCDFNMDSLISAEAKQGNIDVKSAD
GLMNNPGKSYCAFMTAGGENVHVSEKGILKAKSILNENLDNCTDSNAIEEAWFSDGRFLL
LTEDGTGVKKGARNKSHYSDLNGDEKSCDFSTAGGKTVHMSDGALQKAKSILNECDVIEN
PQPENGHNVHLEKIPTKEMHEISHGSAASGKGVFISEKALQHVKSVYVLGETGNVKYSVG
SNPVGSHFGFSTASSKGLSVSEKALQEASDTLARDTDPHKRSEENRPLKVPSPHINVQCV
PVKAVRLEDREVIQTIVGMECSKSSSVECQAESSLLNFESLGFSGCSVTQRRYFAQEAMD
CTKALLEDEDLTDHCPGTPIQAKPMSCKGSFEMRSGIWKRSAEDLGMTDQPPLKRKLLTK
FDRTVDCIRRSKLTPAKSSSDGTFKDRRVFKYNVALQPNVTRPYRANQRCVDTRLNKPEP
QKTTSDPTAKDRKPVSSKTAVFVPPFRKNVKLESLGSSGLQDKTRAPGVFVSPFRKNNRL
TREGSFKPSEDNYSPFISEMPTKTTSVPLPKYNPITDTGSDNAKESIKDPQNIDKTDRGD
DCGHCLPVTLGGEDATAEESIAGQLAPDATGTLLDVVYDAECLQLARDMQDMRIRKKKRQ
TIRPLPGSLYLAKTSGVARLNLREAVGGWHPVQHTHKQLYGYGVHRHVWDISSESAEAFR
FVCRHFFRREAFVEGCIQLADGGWLIPRNDGTAGKHEFHRALCDSPGVDPELISEDWVFN
HYRWVVWKRACMERAFPEVMGSLCLTPEQVLLQLKYRYDLEVDNSKRSALRKIMERDDTA
VKTLVLCVCGVVTKGHNPTRQSWSETKTKTPPGSAAGSKAKSSPVGLIWLTDGWYAIKAQ
LDVPLTAMLHRGRLAIGGKVLVHGAELVGSQDACSPLEAPDSLMLKIGANGTRAARWYTR
LGFYSNPSPFLLPLSSLYSNGGPVGCVDIVVLRSYPTQWMEKKSDGGFVFRAGRAEEREA
RRHGNTKHRAMEILFAKIQTQFEKEEDVTKPFPPTEHHPTVCSKPRGRRRTLRGRDIETL
LDGEELYDAVENDPVYLEGRLSEQQREALNSYRLCVGERRQEALQERFRQALESTREGEG
RSCHNRDVTPIWKLSVADSRAKPGSNAVYLLNIWRPSMDLQSLLKEGCRYRAYQLSTSEG
KKRAGNTSIQLTATKKTQFQNLQASAGWLSEIFQAREAVGFRVLLNRDLKPLCGEVDLVG
YVISITDRQGQSPVVYLVDGWLDFVKVRCCSSLVQQGLEEVVKPLALVALSNLQLRAHPS
SPTPIRSAIPGLYAGDLVSFSTNPKEPHLQEAAAQLRTLVQGQEHFFRTAEERLSNLVQV
SVQCLPPLPWKAAKPDSRTTMTPQQSVRSVGPFTPLNSVVPPPPACFSGGDNKDPKSLKR
KRGLDYLCRIPSPPPLCPLGTMTLPSPCVNKTFNTPRRAETHQILKTPLAPAPQHVHLPL
EDEWVEDEELVMIDTQALHDGIERDT
NT seq
8541 nt
NT seq
+upstream
nt +downstream
nt
atggacataaggagaaacatgtttgatgctttcaaggatcaaatatgggaagatttggga
cctctgaacccaaactggtttgaagagctcactgctaaagcttccagtcgggattggggt
gatacagagaaagataatcccagtactgcaatatcttgtggacaagatggcagtttcaaa
acaccattggggaaatgtccccttgatggtgatatgttctctaccccaaagattttcagg
cagagaagaccacagtctcctgagacgttgatagaagatgcagtgttttttcctgatcaa
ggaacctctgcaactgaaaaaatggacacaagcccatgcttatttggaaaatcaatagac
agcgggacccccagtaaatcctatagaacaaggctgcatggagacagttttgggctgctt
gacacaccgaaacactctacgcaggcacactctaccaaacgtatatctgaaagtcttggt
gcacagttagaccctgatatgtcctggaccagttctctcaatacacctgtcatgtcgccc
accataattttgactaaaagtgaggagcatagtctaatgtgcccagtaagaattgctacg
gaagagcaggttatgtttgtgcgaaagcttttcccttcggccaaggagtctagaagcaca
atgctgtcaccagaacagaatgatagacctctctgtcaacacaatggactggattcccac
ttgcctggtgtgattgacatctcccctggctttcaagacacgttacctggtgacagtggc
agccattggaaacagactttaccagatgctattgaagacggagaaatctccagcacaatg
accggtgtcgtagatggagccgaggatgtcatctccatattcttcagcaacaaaactttg
gctttacaacaggtgaagaccaacgagagaatcaaaaggaagccaagtggcgcaactaag
gaacacgtacctacttctacaacggaacatgacaaagtatccagtgagagagcagaagaa
taccaacacaccagggaaacctctgagcctcttgagtccaggactgacatgaagtctggg
gatttggtgacttctcagtggactctaataaatgtacctgacttttcaggctatgatatg
gattcatttcaccatgaggggtcttcctctactaaacacataattccacacggtggcaaa
ggtgaaacattccgtgatttcactggaagccagcaggaagccactgtccaggtggagtct
gctctttccagaagaacattaccatgcaccagccagccagagggatctcaattgacaggg
tctgtagtcgaaagctctctagaacacacctttcccaggaaaacaaggacatttgtttac
tgtgtccaaaatccacttctgtcagtgcaagagaaatatgttactcagatgttacctgca
tcacctggaactgctcccagaggtgaaaatcagaacatgaaacaaagtaaaaccatacca
gatgaagctgaggttaataatcttaacaaaactgccttggatgggaaaaagccgctagtt
cagaaaagtgcagctgaagaaaatattgtttcacaagcaccaagcaaagaccctgatctt
gatatgtcacagctttgcagggtatttgcacaagattttagccaagtaattgactacagt
caaccatgcagcaaaagagcagatgctattaaaaatggcttctctgcatcagcttgtctc
tcagcaatgagactaaggaacagaaaactgttgaatagactagaatggggtcaggaacct
gaacattttaactctggcatcagtgatgaaatgcatattcctggttctcagtttagcaac
tctgcaaacacatctagaatgaagagtacagtgtgtgatagcggcttccccccctccacc
ctttctgatgtcacacaaacagaatcatccaacgttcaccctagctctgaaaaaagttat
ggaaatcaatcatctagagggtttaaaacgggtaacaactggattatctctttgcctcca
gaagcaatcaagaaagcaaaagcatcattagattacttaattgaggaaaatatgactgat
gttgttactgctgccagtgaagtgaaacctgtgttgtcatgtgtgacaggaagccgactg
tccacagaagtgaagttcattagtccactcaacattgccaaaaggtcaaagcaaaccagc
gtaaaattgaatggtcaagttcatgttccgacccatcagagcatcaatgtttcggtttcc
tcacaccctgggtctggtttcaaaatggcctccaataagaagatacattttttttcagca
aatctggagaaagacgaggatctgtttaaggagattgaggatgaaatacctgcagtcaat
attcctgagataagccttcctgaggaaggtaacatgtcatgtggattggagcttgttgat
ggatctcatttaccacctctaccctatacacgccagaggtctgttaatagccaaggtcca
ttgacagcctcacagagagctgatgtttcagaattgtgcagtctcttagaagctgcagac
agccaatttgagttcacacagtttaaaccagcaaagctgaacttctatgttccagatggt
agcccccctcgtcaatctgagaaagagttagatcccgactttctcacaggcatagatttc
gatgacagtttcaactctgatgttgagaagcaatctgtaaagatggtcacccctgacaaa
aagacaactatttctcattgcaaggaaatttgccaagtaaccaccaaaattaaatctagt
ggggcatcatccagcaattcaacagagaaatccaaagaacatgttatccacagaagagta
ctttacattcccagttatagctctgaaaacatagctgaccattcctttggtttgttgaca
aaatccacaaacaagaaccatttactcgatatggatacgaacaccagtggaatggagtgt
gaacgcaaaaatctccccaagttggatgtgggttttaaaactgctggtggaaatgctatg
atagtttcagagaagtgtctgagcaaagcaagggccttgtttgcagattttgaggaaaaa
aactgtgcacccaagtgtgcagtaaaaaatacagaacaagttgaaatttcacctgttcaa
tatagaggcgaagttgacacaaatgtttattcaaatgtgacacattttcatggccctgaa
aagaaagtagatctgaaggaactacatgatgaatacattgacaagattaaagtggacttt
acacattctcacacacatggggatggtggtttccagacagccagtggtaaaggagtgacc
atctcggcaaaggcccttcaaaaaaccaatgcagtcttcaaagactgtgacgctaaggaa
agttcaggttgtgcatcaaagctgagcaaaacaagtgttgtatcagagactggcagcaat
aattttgagagaaacaattgtggcttcagcactgctcgagggaagagacttgatgttcct
gcaaaatctctactgactctcctgaatgactgtgatgaattggaaaattctaagccaggg
aaaatccccagcttgaatgcaaagataccaagtcagaatattcagcagaaaagtgactgt
gattttaagaaacccagtattaaagcagcctccatatcagcaaggatcccttttacagca
aaaactcaatttgatagtggcatgtcacatgatgttctaggggcaaagagcaaaatgctt
gaaccagaaaattctcaaacccatgctaaagatcctttgaaaaatggatgtgggttcagc
actgccagtggtaaaatagtgtctgtgtcagaaggggcgctattgaaagcacaggctctt
ttgagtgaatgtaatgtagatggagaggaactttctaaatcaaagaaaaagatcagagta
gatcttcataacccaacacagaagcacagtggatttaagactgctggtgtcaaagaagtt
accgtatcacctaaggcccataagcaagcacaggctcttttcaacaactgtgatttcaat
atggacagcttaatcagtgctgaagcaaagcaagggaatatagatgtaaagtctgctgat
ggtctgatgaacaatccagggaaaagctattgtgccttcatgacagctggtggagagaat
gtgcatgtatctgaaaaaggtattttgaaggcgaagagcattctgaatgaaaaccttgat
aactgcacagactcaaatgccattgaggaggcttggttttcagatggtagatttttgtta
ctcactgaagatggtacaggtgtcaaaaaaggagcaaggaacaaatcacattattctgac
ctcaacggggatgaaaagagctgtgatttcagcactgccggtgggaagactgtgcatatg
tccgatggagcactccagaaagcaaagtctattctgaacgaatgtgatgtaattgaaaat
ccacaacctgagaatggccacaacgtgcatctggaaaagattccaacaaaggaaatgcat
gaaatctctcatggtagtgcagccagtgggaaaggggtgtttatttcagaaaaggctctt
cagcatgtgaagtctgtgtacgttctgggtgagactggtaatgtaaaatattcagttggc
agtaatccagtcggaagccattttggttttagcacagccagtagtaaaggactgtctgtt
tcagagaaggcacttcaagaagcgtctgatacccttgccagggatactgaccctcacaaa
agatctgaagaaaataggccactgaaggtcccttctccccatattaatgttcagtgtgtg
ccggtcaaagcagttcgactggaggaccgcgaagtgatccagaccattgttggaatggaa
tgtagtaagtcttcgtctgtagaatgtcaagcggagtcttccttgttaaattttgaatcc
cttggattcagtggctgctctgtgacccagaggaggtactttgcccaggaggccatggat
tgtaccaaggctcttttagaggacgaagacttgaccgatcattgtcctggaacaccaatc
caagctaaacccatgtcctgcaaggggagttttgagatgagaagtggaatttggaaaagg
tcggcagaggatttagggatgacagaccagcctcctctgaaaagaaaactcttgaccaaa
ttcgacagaactgtggattgtattcgacggtcaaaactcactccagctaaaagcagttca
gatggtacatttaaagacaggagagtcttcaaatataatgtggctcttcaacctaatgtc
acaaggccatatcgcgctaatcagagatgtgtagacacaaggctgaataagcccgagcca
cagaagacaacgtcagatccaactgccaaagaccgtaaaccagttagctccaagacagct
gtatttgtccccccattccggaagaatgtcaagcttgagtcactggggagcagtggtctt
caggacaagactagagcgcctggtgtgtttgtttccccgtttcgaaaaaacaaccgctta
accagggagggttcctttaagccttcagaagataattattctcccttcatctctgaaatg
cctaccaagaccacatctgttccacttcctaagtacaaccccatcactgacactggtagt
gataacgcaaaggagtccattaaggacccacaaaatattgacaaaacggaccgaggtgat
gattgtggccattgccttcctgtcaccctaggaggagaggatgccactgcagaggagtct
attgcaggtcagctagcccctgatgccaccggtacccttctagacgttgtttatgatgca
gagtgcttgcagcttgcccgagacatgcaggacatgaggataaggaagaagaagcggcag
accattagacctctccctggcagcctgtacctggccaagacatctggggtggccaggctg
aacctcagggaggctgttggaggttggcaccctgtacaacacacacacaaacagctgtat
ggctatggagtgcaccggcatgtttgggatatcagcagtgagagtgctgaggcgttccgc
tttgtttgccgacacttcttcagacgcgaggcgtttgtagaggggtgcattcagctggcc
gacgggggttggctcattcctcgcaacgatggaactgcagggaaacatgagttccacaga
gcgttgtgtgacagccctggcgtggaccccgagctgatcagtgaggactgggtgttcaac
cactaccgctgggtggtgtggaaacgggcctgcatggagagggcattcccagaggtgatg
ggcagcctctgtctcacaccagaacaggtgctcctacaactgaaatacaggtacgacttg
gaggtggacaacagcaagaggtctgctctaagaaagatcatggagagagacgacacggca
gtcaagaccctggtgctttgtgtatgtggtgttgtcaccaaaggccataacccaacaagg
cagagctggagtgagaccaagaccaaaaccccacccgggagcgccgcagggtctaaagcg
aagtcgtcccctgtaggcttgatctggctgacggatggctggtacgccatcaaggcccag
ctggacgtcccactgaccgccatgctccaccggggccgcctggcgattgggggaaaggtg
ctggtccacggggccgagttggtgggatctcaggatgcctgctccccactagaggctccc
gactccctcatgttgaagattggggccaacggcaccagagcggcgcgttggtacactagg
ctagggttctacagcaaccctagtccgttcctcctccccctctcctccctctacagcaac
ggaggccccgtgggctgtgtggacattgtggtgctgaggagctaccctacccagtggatg
gagaagaagtcggatggagggtttgtgttccgcgcaggccgtgcagaggagagggaggca
cggcgtcatggcaacaccaaacacagagccatggagatactgttcgccaagatccagacc
cagtttgagaaggaggaggatgttacaaaaccttttccgcctactgaacatcacccaaca
gtttgcagtaaacccagaggccggagacggaccctgcgtggtcgagacattgagacactg
ctggacggggaggagctgtacgacgcggtggagaatgacccagtttatttggagggccgt
ctgagtgagcagcaacgggaggcgttgaacagctataggctttgtgttggtgagaggagg
caagaggcactgcaggagcggtttcgccaggctctggaaagcacccgggagggcgagggc
aggagctgtcacaaccgagacgtgacccccatctggaagctcagcgtcgctgactccagg
gccaagccgggcagcaatgcagtgtacctgttgaatatctggcgcccctccatggatctg
cagtccttgctgaaggagggctgtcgatacagggcctaccaactatccacatcggagggc
aagaaacgagccggtaatacctccatccagctcaccgccaccaagaaaacccagttccag
aatttacaggcttctgcagggtggttgtctgagattttccaagcccgagaggcggtcggc
tttcgcgttctcctgaaccgggacttaaagccgctctgtggagaggtggatctggtaggc
tacgtcatctccatcacagacagacaaggtcaatctccagtggtgtatcttgtggatggc
tggctggactttgtcaaggtgcgctgctgcagcagtctggtccagcagggcttggaggag
gtggtcaagcctctggctctggtggccctcagtaaccttcagctcagagcccatccctcc
tcccccacccccatccgcagcgccatccctggcctatacgctggagatctagtctcgttt
tccaccaaccctaaggagccacatctacaggaggctgctgctcaactcaggacccttgtc
cagggccaggaacacttcttcaggactgcagaggagaggttatctaacttagtccaggtg
tctgtccagtgtcttcctccgctgccatggaaagcagccaaaccagattcaaggactact
atgacaccccagcagtcagttcgaagcgttggccccttcacccctctgaacagcgtcgtc
ccccctccacccgcctgcttctcagggggggacaacaaagatcccaagagcttgaaaaga
aagaggggcctggactacctgtgtcgcatcccctctccccctccactctgccccttgggc
accatgacattaccctcgccgtgcgtcaacaagaccttcaacacccctcgcagggctgag
acccaccagatcctaaagacacctctggcccccgctccacagcatgtccacctgccccta
gaggatgagtgggtggaggatgaagagctggtcatgattgacactcaggccttacacgat
ggcatagagagagacacgtga
DBGET
integrated database retrieval system
