Oncorhynchus keta (chum salmon): 118366160
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Entry
118366160 CDS
T09424
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118366160
03015 mRNA surveillance pathway
118366160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118366160
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118366160
mRNA cycle factors
P-body specific factors
118366160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
118366160
NCBI-ProteinID:
XP_052347758
LinkDB
All DBs
Position
33:complement(8594492..8615168)
Genome browser
AA seq
1303 aa
AA seq
DB search
MPAEGKRSLNMDEKEVSSFSNKEKDRDADRRPASSRDKVKDEAKMSGKKDIGKAAEEKRR
RLEEDKKKKEEKERKRKEEEKQKAEEEQRKKEEEEKKQQEEQERKVQEEEVKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRVRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQRDALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQHEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKSKDKEEAAAKEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQGIKLGYERGQGNRARAHSWVLRANQLNREQEDEEASTGSHLKLIVDAFIQQLP
NCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDV
ADDLCSILKGDFRFHIRKKDQINIETKNKTVRFIGELAKFKLFSKTDTLHCLKMLLSDFS
HHHIEMACTLLETSGRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCN
PPPTEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPESKGYLICCMVNI
WNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLG
ELYNYRMVESAVIFRTLFSFISFGVNPDGGPSPLDPPEHLFRIRMVCTLLDTCGQYFDRG
SSKRKLDCFLIYFQRYIWWKKSVEVWSAEHQFPIDIDYMISDTLELLRPKMRLCISLEDS
ARQVTELEREFLVKLGLAMDRQKDGRPSSAMGSEGEALDEDDDDDDEEGGADTEEQSGNE
SEMNEPEEEEGSENEEEEREEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAED
EDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKSQLKKGPGGPVCSGEGDADISDT
MQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDY
QEMMASLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagggcaagagatcattaaacatggatgagaaagaggtgagctcctttagt
aacaaggagaaagaccgggatgctgatagacggcccgcctcctcccgggataaagtgaag
gatgaggcaaagatgagtggcaagaaagatattggtaaggctgcagaggaaaagaggagg
cggcttgaggaggacaaaaaaaagaaggaagaaaaagagcggaaacggaaagaggaggag
aaacagaaggcagaggaggagcagaggaagaaggaggaagaggagaagaagcagcaggag
gagcaggagaggaaagttcaggaggaggaggtcaagagacagcgtgaagaggaggcagct
caactcaaagagaaggaggagggccaccagctccaccaggaggcctgggagcgccaccag
tgccggaaggagcttcgtgtccgcaaccagaatgcccacgagggccgtcccgaggagacc
ttctttagccgccttgactccagcttgaagaagaacacagccttcgtcaagaagctgcgc
acgctcaccgagcagcagcgcgatgccctctccaacgactttggctcgctcaacctcagc
aagtacatcggcgaggcggtgggctctgtggtggaggccaagctgaagatctctgacgtg
ggctgtgccgtgcacctgtgctccctcttccaccagcgctacgccgaattcgccccactg
ctcctccaggcctggaaaaggcactttgaggcgcgcaaggaagagaaggcacccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgcagagctcaccatcgtaggcctgttcacc
gacaaggagggcctgtcgctcatctacgagcagctgaagagcatcatcgggacggaccgc
gagacacacacgcatgtgtcagtggtcatcagcttctgtaagcactgcggggatgacatt
gcgggcctggtgcctcgcaaggtgaaggctgcacgggagaagtttggcctggccttccct
cccagcgagatcatcaacacggagaagcagcagccctttcagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagctgcagaacattgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacaggcacaagcagcat
gaggagtttgccacgtcctaccagaagctgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagagcttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggggagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctacgagaacatggtggacctgaaggccttcgtcccc
gccatcctgttcaaagataacgagaagtccaaggacaaagaggaggccgctgctaaagag
gctaaagatgctgcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgacgaggcagagaacgaggcagagctcgcc
aaaaaactgttggacgagcaagggatcaagttagggtatgagagaggtcagggaaacaga
gctagggcccactcatgggtgctcagggccaatcaactaaacagagaacaagaggatgag
gaggcaagcaccgggtcccacctgaagctcattgtggacgccttcatccagcagcttccc
aactgtgtcaacagagacctcatagacaaggctgccatggatttctgcatgaacatgaac
acaaagtcaaacaggaggaagctggtccgagctctcttcaccgttcccagacaaaggttg
gatctgctgcccttttactcccgtctggtggccacccttcacccctgcatgtcagatgtg
gccgatgacctgtgctccatactcaaaggagacttcaggttccacatccggaagaaggac
cagatcaacatcgaaacaaaaaataaaactgtgaggtttatcggggagctggccaagttc
aagttgttctcaaaaacggacactctgcattgtctgaagatgctactgtcagacttctcc
catcaccacatagagatggcctgcaccctgctggagaccagtggtcgcttcctcttcaga
tcccccgactcccacctccggaccagcgtccttctggagcaaatgatgcgtaagaagcag
gcgcagcacctggatgctcgctacgtgaccatggtggagaatgcctactactactgcaac
cccccgcccacggagaagactgtcaggaagaagaggcccccgctgcaggagtacatccgc
aaactgctctacaaggacctctccaaggtcaccacggagaaggtgttgaggcagatgcgt
aaactcccctggcaggacccagagtctaaaggctacctgatctgctgcatggtcaacatc
tggaacgtcaagtacaacagcatccactgtgtggccaacctgctggccggccttgtggcc
taccaggaggacgtgggcatccacgtggtggacggggtcctagaggacatccgcctggga
atggaggtgaaccagcccaagttcaaccagcgtcggatcagcagtgccaagtttctgggg
gagctctacaactaccgcatggtggagtcagcggtcatcttccgcaccctcttctccttc
atctcgttcggggtgaacccggatggcggccccagccccctggacccccccgagcacctg
ttccgcattcgcatggtctgcaccctgctggacacctgcggacagtactttgaccgcggc
tccagcaagaggaagctggactgcttcctcatctacttccagaggtatatctggtggaag
aagagtgtggaggtgtggagtgcagagcaccagttccccatcgacattgactacatgatc
agtgacaccctggagctgctccgaccaaagatgaggctctgcatctccctggaagactcc
gcacgacaggtcaccgagctggagagagagttcctcgttaaactgggactggccatggat
aggcagaaggacggccggccctccagtgccatggggagcgaaggcgaggctctagacgag
gatgacgatgatgacgacgaagagggaggggcggacacagaggaacagtctggcaatgag
agcgagatgaacgagccagaggaagaagaagggtctgagaatgaggaagaggagcgggag
gaagaggaggagaacaccgactatctgaccgactccaacaaggagaacgagacagacgag
gagaacaatgaggtgaccatccgtggtggcggtctgaagcatgtggcatgtgctgaggat
gaggacttcatccaggctctggacaagatgatgctggagaacctgcagcagcggagcggg
gaggcggtgaaggtgcaccagttggacgtggccatccccctgcagctgaagagccagctg
aagaaaggtcctggcggacccgtctgctctggagagggggacgcagacatctcagacacc
atgcagtttgtcatgctcacacgcaagggcaacaagcagcagtttaagatcctgaacgtg
cctttatcttcccacctggctgccaaccacttcaaccagcagcaggcggagcaggaggag
aggatgaggatgaagaagctcactctggacatcaacgagagacaggagcaagaggactac
caagaaatgatggcgtctctggcccagcggcccgctcctgccaacaccaaccgggagcgg
cggccgcgctaccaacaccccaaaggggcacccaacgccgacctcatcttcaagaccgga
ggaagacgctag
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