Oncorhynchus keta (chum salmon): 118366412
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Entry
118366412 CDS
T09424
Name
(RefSeq) periodic tryptophan protein 1 homolog isoform X1
KO
K14791
periodic tryptophan protein 1
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oke03009
]
118366412
Ribosome biogenesis [BR:
oke03009
]
Eukaryotic type
90S particles
Other 90S particles
118366412
Pre-60S particles
Other pre-60S particles
118366412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WDR55
EIF3I
Beta-prop_EML_2
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML
WD_LRWD1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
118366412
NCBI-ProteinID:
XP_035604951
LinkDB
All DBs
Position
33:complement(22874616..22883057)
Genome browser
AA seq
492 aa
AA seq
DB search
MSSQITCVGWVKRGVSKETPDKVELSKEELQRIIAEAKEQLGERVGEEEDDEGMASGQEQ
SDEAEAVQGQEPEQDENEAGREEADELAEYGLDRYDEEDSVTANLGDSLAGLTVFSTNEE
DPYITIKDTDQYEREDFQIKPNDNLVISGRAEKDCCNLEIHVYNAEEESLYVHHDILLPA
YPLCVEWLNFDPSPEGTGNYAAVGNMTPQIDVWDLDVVDCLEPAFTLGSKKASKKKKKSK
KAAAEPVEGHTDAVLDLSWNKLVRNVLASGSADKTVILWDLAQGKPATTLCRHTDKVQTL
MFHPFEAQTLISGSYDKSAILYDCRSPDSSHRTWRFSGQVERVAWNHFSPCNFLASTEDG
FVYCLDARSDKPVFTLRAHDGEVSGLDLSSQIRGCLVTSSADKHVKIWDILGNKPNLVHT
RDMKMGVLFCAACCPDMPFVYAFGGQRDGLRVWDISDVAAVAEVFGNRERLVATTAPEAS
SSTSSTADMELS
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagttctcagatcacttgtgttggatgggtaaagcgaggcgtttcgaaggaaacacca
gataaggtggagttgagcaaagaagaattgcaacgcattatagcagaggcaaaagaacaa
ttgggtgaacgcgtaggtgaagaggaggatgatgaaggcatggccagcgggcaggaacag
agtgatgaggcagaagctgtacagggacaggagccagagcaagatgaaaatgaagcagga
agggaggaagctgatgaactagcagagtatggtttggatagatatgacgaggaagactct
gtgactgccaaccttggtgacagccttgccggcctcacagtgttcagcaccaatgaggag
gatccttacattaccatcaaagacacagaccagtatgagcgagaggactttcaaatcaag
cccaatgataacctcgtaatttcaggcagagcagagaaagactgctgcaacctggagatt
cacgtatacaatgctgaggaggaatccctctatgttcaccatgacatactcctgccagcc
tatccactgtgtgtggagtggcttaactttgaccctagtccagaaggcacaggcaattat
gcggctgtaggcaacatgacaccgcagattgacgtgtgggacctggatgtggtggactgc
ctagagcctgccttcactctggggagcaagaaggcctccaagaagaaaaagaaaagcaaa
aaggctgcagcagagccagtggaaggtcatacagatgctgtactcgacttatcctggaac
aaactggtccgcaacgtcttggccagtgggtcagccgacaaaacagtgatcctgtgggat
ctggcacagggaaagccggccacaacactgtgcagacacactgacaaggtccagacgttg
atgttccacccctttgaagctcagaccctgatatcaggatcatacgataagtcggcaatc
ctgtatgactgccgcagcccggacagtagccatcgcacttggaggtttagcgggcaggtg
gaaagggtcgcctggaaccacttctcgccctgcaacttcctggcgagcacagaggacggc
tttgtttactgtctggacgcacgctcggacaagcctgtgtttacactaagggcacatgac
ggagaggtgtcaggcttggaccttagcagccagatccggggatgcttggtcacctcgtca
gcagataaacacgtcaagatttgggacatcttggggaacaagcccaatctggttcacacc
cgggacatgaaaatgggggtgctgttctgtgcagcgtgctgtcctgacatgccctttgta
tatgcatttggaggacagagggatggcctgcgggtttgggacataagtgatgtggcagca
gtcgctgaggtgtttggcaatcgggagcggttggtggcaaccacagcgcctgaggcatcc
agcagcacttcctccacagcagatatggagctttcctag
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