Oncorhynchus keta (chum salmon): 118366724
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Entry
118366724 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oke01002
]
118366724
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oke04121
]
118366724
Enzymes [BR:
oke01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
118366724
Peptidases and inhibitors [BR:
oke01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
118366724
Ubiquitin system [BR:
oke04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
118366724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
Motif
Other DBs
NCBI-GeneID:
118366724
NCBI-ProteinID:
XP_035605220
LinkDB
All DBs
Position
34:complement(11752669..11830763)
Genome browser
AA seq
2633 aa
AA seq
DB search
MTATTRGSPVGGNDSQSGQGQAPDAQSQPPLPQNQTLSPNSSNENSPVSPLDEQGQGDGP
PQLEEEVEEPAFPHTDLTKLDDMINRPRWVVPVLPKGELEVLLEAAIELSIKELDVKCEA
CQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLA
MAFNPHCKFHIYNGTRPSETVPAGAQLADDELFARXPDPRSPKGWLVDLINKFGTLNGFQ
TLHDRFISGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELK
KEAKNEAKNDALSMIIKSLKNLASKVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNAL
NEVNKVISSVSYYTHRHGNPEEEDWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKLEK
ILRFVIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKAS
WTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKI
LDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLRKKMPINI
QTNLVGQTQRSPHVFYRHDLINQLQHNHALVTLVAENLSAYMETMRQFSKAEQAEFDPQT
VRVGSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWY
SKLMGDEPDLDPDINKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAY
MMDDLELIGLDYLWRVVIQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFD
RLKASYDTLCVLEGDKDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERTILPMSRAF
RGKHITLIVRFPNQGRQVDDLDIWSHTNDTIGSVRRGILTRIKANATHTKIELFIGGEVV
DPADDRKLIGQLNLKDKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHFSEGPNPE
VESCLPGVIMSLHLRYVSFLWQVADLGCSPNMPLLRDGARVLMKLMPPDNSTVENLRGVC
LDHAKLGENGLSPTLDSRFFGPSPSQVLYLIEVVYALLMPASSTLGEDASDFQYNFLKSG
GLPLVLSMLTRNNFLPSADMETRRGAYLNALKIGKLLLTAVGFGHVKAVAEACQPNAEGP
TPISPINQATHDQALVLQSALQNLPNPASECMLRNVAIRLAQQISDENFFQASKYIPEIC
VIRAVQKIAWASGCGTIQLVFSSNEEISKIYEKTDVVKEPDGEDEQVCCEALEVMTLCFA
LLPTALDTLSKEKAWQTFIIDLLLHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLL
FTVLGSTAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKKIRDEVKRT
GETGVEETILEGHIGVTKELLAFQTPEKKYYIGCENGGANLIKELMDDFIFPASNVYLQY
MKSGEFPTEQAIPVCSSPASINAGFELLVALSVSCVRNLKQIVNMLTDMYYLGCEALTEW
EYLPPVGPRPTKGFVGLKNAGATCYMNSVIQQLYMIPPIRDGILAIEGTGTDVDDDMSGD
EKQESESNADPRDEVFSYNHQFDDKPSLSKSEDRKEYNIGVLRHLQVIFGHLASSRLQYY
VPRGFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQK
ICQGCPHRYECEESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVK
RLLIKKLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNP
ENQVIQQNEPSDPEPPGSSKYRLVGVLVHSGQASGGHYYSYITQRNVGVADGERNRWYKF
DDGDVTECKMDDEEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSLD
KDSELVKYIQELTISSSSNNKPSHQVKMPNVIECSVRKQNVQFMHNRMQYSLEYFQFVKK
LLTCNSVYLNPPPGQDHLLPDAEEMAMISVQLAARFLFSTGFHTKKVVRGAASDWYDALC
VLLRHSKNVRYWFAQNILFAYANRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPP
PTASPASASTQSQACDNLRLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGLAE
KTQLLKLSVPATFMLVALDEGPGPPIKYQYAELGKLYTVVSQLVRCCDVAARMQSSINGN
PPLPNPYGDANQTTPVMPVQQLVGEILFVRTSYVKKIIEDCSNSEETVKLLRFSCWENPQ
FSSTVLSELLWQVAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNVLKGIPDDRDGLFDT
IQRSKNHYQKRAYQCIKCMVALFSSCSVAYQILQSNGDLKRKWTWAVEWLGDELERRPYT
GNPQYTYNNWSPPVQSNETSNGYFLERSHSARMTLAKACELCPEECHLTKPGEAMSEEEA
AMRKSSSPQQLLPGDGTGPQQHTEPDDQEASEDQDTSPPEDTSLYPHSSPGTTTQFQQNN
HPHGQPYTGPAAQLMNNPQYPGPAPSTPGPDPGPRAQENWESTEEVPSTSPKE
NT seq
7902 nt
NT seq
+upstream
nt +downstream
nt
atgactgccaccacgcgtggctctccggtggggggcaacgacagccagtcgggccagggc
caggcacccgatgcccagagtcagcccccgctgccacagaaccagacgttgtcccctaac
tcgtccaatgagaactctccagtgagccccctagatgagcagggtcagggggatggaccc
ccacagctggaggaggaggtggaggagccagccttccctcacacagacctgacaaagctg
gatgacatgatcaacagaccccgctgggtggttccagttctgccaaagggagagttggag
gttcttctagaagctgctatagagcttagtataaaggaacttgatgtgaagtgtgaggca
tgccagaggtttttcagggacggcctgaccatctctttcaccaagattctcacagacgag
gccgtcagcgggtggaagttcgagatacataggtgtatcatcaacaacacccaccggctg
gtggagctgtgtgtggccaagctctctcaggactggttccccttgctggagctgctggcc
atggccttcaacccccactgcaagtttcacatctacaatggcacgaggccctctgagacg
gtgcccgccggggcgcagctggcagacgacgagctctttgcccgcncccctgaccctcgc
tctccaaagggctggttggtggatttaattaacaaattcggcacgttaaacgggtttcaa
acgctgcacgatcgcttcataagtggccaagcactgaacgtccagatcatcgctgccctt
atcaagcctttcgggcagtgttacgagtttctcacgttgcacacggtgaagaagtacttc
ctgcccgtcatcgagatggttcctcagttcctggagaatctaacagacgaggagctgaag
aaggaagccaagaacgaagccaaaaatgatgccctgtccatgatcatcaagtccctgaag
aacctggcctccaaggtgcctgggcaggaggagaccgtcaagaacttagagatttttagg
ttaaaaatgattcttaggttattgcaaatttcctcttttaatggcaaaatgaatgcacta
aacgaagtaaacaaagtaatctccagtgtgtcctattacacacatcggcatggcaacccc
gaggaggaggattggctaactgcagaacgcatggcggagtggatccagcagaaccacatc
ttgtccattgtgctgagggacagcctccaccagcctcaatatgtagagaaactagagaag
atactgcgcttcgtcatcaaggagaaagctcttaccatgcaggacctggacaacatctgg
gctgcacaggctggtaaacatgaggccattgtgaagaacgtacacgaccttctggccaag
ctggcctgggacttctctcctgagcagctcgaccacctctttgactgcttcaaggcgagt
tggacgaacgccagtaagaagcaacgtgagaagctgttggaactgatccgtcgcctggcg
gaggacgacaaggatggcgtgatggcccacaaggtgctgaacctgttgtggaacctggct
cacagcgatgacgtgcctgtagacatcatggaccaggcactcagtgctcacataaagatc
ctggactacagttgctctcaggatagagacacgcagaagatccagtggatcgatcgcttc
atagaagagttgcgcaccaatgacaaatgggtgattcctgcactaaagcagatccgagag
atctgtagcctgttcggagaggctccccagaatctcagaaagaaaatgcctattaacata
caaacgaacttagtgggtcagacccagaggagtcctcatgtgttctatcgtcatgacctg
attaaccagctgcaacacaaccatgccctggtcacgctggtggctgagaacctctctgcc
tacatggagaccatgaggcagttctctaaagccgagcaggcggagtttgacccccagact
gtgagggtagggagccgctacagccacgtacaggaagtccaggagagactcaacttcctg
aggttcctgctgaaggatggccagttgtggctctgtgctcctcaggccaaacagatctgg
aagtgcctggctgagaacgcagtctttctttgtgaccgagaggcctgcttcaaatggtac
tccaagctgatgggagatgagccagacctggacccggacatcaacaaggacttctttgag
aacaacgttctgcagctggacccgtctctgctcacggagaacggcatgaagtgctttgag
aggttcttcaaggccgtcaactgcagggaaggcaagctggtggccaaacgtagggcctac
atgatggacgacttggaactcataggcctggactacctctggagggtcgtaattcaaggg
agtgatgacatcgccagtcgagccatagaccttctaaaagagatctacaccaaccttgga
ccaaaactacaagtcaatcaggtagagatccacgaggatttcatccagtcatgtttcgac
cgtctgaaggcgtcgtacgatacgctctgtgttctggaaggggacaaggacagcatcaac
tgtgcccggcaggaggccatccgcatggtccgcgtgctcactgtgctcaaggagtacatc
aacgagtgtgacagtgactaccatgaggagaggaccatactgcccatgtccagggcgttt
cgggggaagcacatcacgttgattgtgcgtttccctaaccagggccgtcaggtggatgac
ctggacatctggtctcacaccaacgacaccattggctcagtgcgccgcggtatcctcaca
cgcatcaaggccaacgccacgcacaccaagatagagctcttcattggcggggaggttgtt
gacccagccgacgacaggaagctgattggccagctcaacctgaaagacaaaacgttgatc
acagccaagctgacccaggtgagtgccaacatgccctccagcccagacagctcctcggac
tcttccactggctcaccgggtaaccatggcaaccacttcagcgaagggcccaaccccgag
gtggagagctgtctccctggagtgatcatgtctctccacctgcgctacgtctccttcctg
tggcaggtagcagacctgggctgtagccccaacatgcctctgctacgagacggagccaga
gtactgatgaagctgatgcctccagataacagtaccgtggagaacctgcggggtgtatgt
ctggaccatgccaagctgggagagaacggcctcagcccaacactggactcacgcttcttt
ggcccctcgccatcacaagtcctctacctcatagaggtggtgtatgccctgctcatgcca
gccagctccacattgggtgaggacgccagcgacttccagtacaacttcctgaagagtggc
gggctaccgctggtactgagcatgctcacgcggaacaacttcctgccgtcggccgacatg
gagacgcggcgaggggcatacctcaacgctcttaagatcggcaaactgctgctcaccgct
gttgggttcggacacgtcaaagctgtggccgaggcttgccagcccaacgctgaggggccc
acacccatctcaccgattaaccaggccactcacgaccaggctttggtcctccagagtgcc
ctgcagaacctccccaaccctgcctctgagtgcatgctccgcaatgtagctatacgcctg
gcccaacagatctctgacgagaacttcttccaggcgtcgaagtacatccctgagatctgt
gtgatccgggcagtgcagaagatagcatgggcttcaggctgtggcaccatacagttggtc
ttcagctccaatgaagagatcagcaaaatctatgagaagacggacgtggttaaggagccg
gacggggaggatgagcaggtgtgctgtgaggccctggaggtcatgaccctgtgtttcgcc
ctgctgcccaccgctctggacacactcagtaaggagaaggcctggcagaccttcatcata
gacctgctactgcactgccacagcaagtcagttcgtcagatggcccaggagcagttcttc
cttatggccaccaggtgctgcatgggccaccgacccctcctcttcttcatcaccctcctc
ttcactgtgctggggagcacagctaaagagcgggccaagcatgctggggactacttcacc
ctgctcaggcacctcctgaactacgcctacaacagcaacatcaacctgcccaacgcagag
gtgttgctcaacaacgagatcgactggctgaagaagatcagggatgaggtgaagaggaca
ggggagacgggcgttgaggagaccatcctggagggacacatcggagttacgaaggagttg
ctggccttccagacaccagagaagaagtactacatcggctgtgagaatggaggggccaac
ctcatcaaggagttgatggacgacttcatcttcccagcgtctaacgtgtacctgcagtac
atgaagagtggggagttccctacggagcaggccatccctgtctgtagcagccccgcctcc
atcaacgcaggcttcgagctgctggtggctctgtcagtgagctgtgtccggaacctcaag
cagatcgtcaacatgctcactgacatgtactacctaggttgtgaggctctgacagagtgg
gagtatctccctccggtggggccgcggcccactaaaggctttgtggggctgaagaacgct
ggggccacctgctacatgaactcagtcatccagcagctttacatgatccctcccatccgc
gacggaatcctggcgatcgagggcaccggcaccgacgtggacgatgacatgtccggcgac
gagaagcaggagagcgagagtaacgcagacccgcgggatgaggtgtttagctataaccac
cagtttgacgacaagccatcgctcagtaagtcggaggacaggaaggagtacaacattggg
gtgctgcgccacctacaggtcatctttggtcacctggcctcctccagactgcagtactac
gtaccccggggcttctggaaacagttcaggttatggggtgagccggtgaacctgcgagag
cagcacgatgccctggagttcttcaactccctagtggacagtctggacgaggctctgaag
gccctgggtcacccggccatgcttagcaaggtgctggggggatccttcgccgaccagaag
atctgccaggggtgcccacatagatatgagtgtgaggagtcgttcaccactctgaatgta
gacatcaggaaccaccagaacctgttggactctatggagcagtatgtcaagggagacctg
ctggagggagccaacgcataccattgtgagaagtgcaacaagaaggtggacacagtgaag
cgtctgctgatcaagaagcttcctccagtgctggccatccagctgaagaggtttgactac
gactgggagagggagtgtgccatcaagttcaacgactactttgagttccccagggagctg
gacatggagccctacactgtagccggggtggccaagctggagggggacgacgtcaaccca
gagaaccaggtgatccagcagaacgagccctctgatccagagcccccgggcagctccaag
taccgccttgtgggggtgctggtccactcaggccaggccagcggcggacactactactcc
tacatcacgcagaggaacgtgggcgtggccgacggcgagcggaaccgctggtacaagttt
gacgacggcgacgttactgagtgcaagatggacgacgaggaggagatgaagaatcagtgc
ttcggaggggagtacatgggcgaggtgtttgaccacatgatgaagagaatgtcctaccgg
cgccagaaacgctggtggaatgcctacatcctcttctacgaacgcatggactcattggac
aaggacagtgagctggtcaagtacatccaggagctgaccatctcgtcctcgtccaacaac
aagccgtcgcaccaggtcaagatgcccaacgtgattgagtgcagtgtgcgcaagcagaat
gtgcagttcatgcacaaccgtatgcaatacagcctggagtatttccagtttgttaagaaa
cttctgacctgtaacagtgtctatttaaaccctccgccaggacaagaccatctactgccc
gatgcagaggagatggctatgattagtgttcagctggctgctaggttcctcttcagcact
ggtttccacaccaagaaagtagtgaggggggccgccagtgactggtatgatgcgctgtgc
gtcctgctgagacacagtaagaatgtacgctactggtttgcacaaaacatcctgtttgcc
tacgccaaccgcttctccgagtacctgctggagtgccccagcgctgaggtccggggcgcg
ttcgccaaactcatcgtcttcatcgcacacttctcccttcaagacggaccctgccccccg
cccacagcatcccctgccagcgcctccacccaatcacaggcgtgtgataacctgcgtctc
agtgaccacctgttgagggctgtgttgaacctcctcaggagagaggtgtcagagcatggc
cgacacctgcagcagtacttcaacctcttcgtcatgtatgccaacctagggctggcagag
aagactcagttgttgaagctgagtgtcccagctaccttcatgctggtggctctagacgag
ggacccggtcctcccatcaagtaccagtatgcagagctggggaaactctacaccgtggtc
tcccagctggtgcgctgctgtgatgtggccgcacgcatgcagtcatccatcaatggtaac
ccccctctccctaacccgtacggcgatgccaaccagaccaccccggtgatgcctgtgcag
cagctggtgggagagatcctttttgttaggaccagctacgtgaagaagatcatcgaggac
tgtagcaactcagaggagacagtcaagctgctgcgcttcagctgctgggaaaatccccag
ttctcctctactgtgctatcagagctgctctggcaggtggcgtactcctacacctacgag
ctgaggccttacctggacctgctgctgcagatcctgctcatcgaggactcctggcagaca
cacaggatccacaacgtgttgaagggtataccagacgacagggacggcctgtttgacacc
attcagcgctccaagaaccactaccagaaacgggcttaccagtgtatcaagtgcatggtg
gccctgttcagcagctgctctgtggcctaccagatcctacagagtaacggggacctgaag
cgtaagtggacctgggcggtggagtggctgggggatgagctggagaggagaccctacaca
gggaacccccagtacacctacaacaactggtctccacccgtccagagcaacgagacctcc
aacgggtacttcctggagcgctcgcactctgcgcgtatgaccctggccaaggcctgcgaa
ctttgccccgaggagtgtcacttaacgaagcccggtgaggccatgtctgaagaagaagct
gccatgcggaaatcgtcctcgccacagcagcttttgccaggggacgggacaggaccacag
caacacactgagcccgatgaccaggaagcctctgaagatcaggacacctcccctccagag
gacacctccctctacccacactcatctcctgggacgaccacacagtttcagcagaacaac
catccccacggacagccatacacaggccccgctgcccagctcatgaacaaccctcagtac
cctggccctgccccttctaccccaggccctgaccccggcccaagagcacaagagaactgg
gagagcactgaggaggtcccctccacctcgcctaaggagtaa
DBGET
integrated database retrieval system
