Oncorhynchus keta (chum salmon): 118367207
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Entry
118367207 CDS
T09424
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118367207 (upf3a)
03015 mRNA surveillance pathway
118367207 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118367207 (upf3a)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118367207 (upf3a)
mRNA cycle factors
P-body specific factors
118367207 (upf3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
RRM_1
Motif
Other DBs
NCBI-GeneID:
118367207
NCBI-ProteinID:
XP_035606254
LinkDB
All DBs
Position
34:complement(47436079..47463726)
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AA seq
490 aa
AA seq
DB search
MRSEKDQMPGGREKSVVEIQFRDIPREQDAVFVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYCRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRREMEKKRQREEEKRKRREEER
RKRKEADKLKKLSEKEIKIKLLKKSDRDDDMDSDRLKDKGDSGDTERAKWDKPSGQMKFK
EAKDKGQMESDKGEHGRRQRDKDHRGRDEERKRQRHHYEFDKFIRRKEETKWGKGYCQDR
AKKDGHHHGSYSYCPSTGDKVGKEDREGIGASRKDRTRNKVSDKACVSQSVLAHQDRGTS
QSEGPHQIGGALPNKDRPAMQLYQPGTRKCMGSASKGYELPIGQSPEHVAVDHCYEAIAM
GTGSEKSSED
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgcccggaggcagggagaaaagtgtcgtcgagatacaa
tttagagacattccgagggaacaggacgccgtctttgtcaactcaaagcagaaagaagag
aagaaggaggtatttactaaggtagtaataaggcgacttccacccaacctttccaaggac
cagctggaagaacagctcagtcctcttccatcctttgactactttgagttcttccctgca
gatcaaagcctctacccacacttgttctccagagcttacatcaacttcaaaaacccagag
gacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggccag
gagtacccagctgtggtagagtttgcaccctttcagaaagtatccaagaagaaactcaaa
aagaaagatgccaaagccggaagcattgaagaagacccagagtactgtcggtttctggag
aactactcctgtgatgaggagaagtccatggccaaccctgaaaccctgctgggagagata
gaggccaagacaagggaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcagaggataagagaggagaagagagaggagcgtcgacgcagg
gagatggagaagaaacgccagagggaggaggagaaaaggaagcggagggaggaggagaga
cgcaaacgcaaggaggcggataaactgaagaagctgtcggagaaggagatcaagataaag
ctcctaaagaagagtgaccgggacgatgacatggactctgacaggctcaaggacaaaggg
gacagtggggatacggagagggccaagtgggacaaacccagtggacaaatgaagttcaag
gaagccaaggacaagggtcagatggagagcgataagggagaacacggccgcaggcagaga
gacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactatgagttt
gacaagttcatacggcgcaaggaggagaccaagtggggcaaagggtactgccaggaccgg
gccaagaaagatggccaccaccacggctcctactcctactgccccagtacgggtgacaag
gtgggtaaggaggacagggaaggcattggcgctagcaggaaggaccgcacccggaacaag
gtgagcgacaaggcttgtgtctctcagtctgtgttagcccatcaggacagagggacgtcc
cagtcagaggggccacaccagataggaggggctctgccaaacaaggacagaccggccatg
cagctctaccagcctggcactcgcaaatgcatgggctcagcgagcaaaggttacgagctc
cccatcggccagtcgccagaacacgttgcggtagatcactgctatgaggccattgccatg
ggaacaggctcggaaaagagtagtgaagattag
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