Oncorhynchus keta (chum salmon): 118367564
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Entry
118367564 CDS
T09424
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
118367564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oke04121
]
118367564
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
118367564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
LIM
PDZ
PDZ_6
PDZ_2
DUF6288
Motif
Other DBs
NCBI-GeneID:
118367564
NCBI-ProteinID:
XP_052349909
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All DBs
Position
34:complement(48357768..48484874)
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AA seq
1244 aa
AA seq
DB search
MAADSNKDSLHYRRSLVIAPKTTTQFNQFLPTKDKPAAYVPAPLRKKRAERHEDSRRSWA
SPKYTEEDGTFTRLLQKYDVASDGSKSMTDLAVDQEALKQVRYEELQKIREQVKENEDQW
QDDLTKWKNRRKSFNSDIVKKKEEREQTTTSSGIGSHSFQNSNWSSIGSRLNSLASLDQE
VFEDSAPVLRTLPPRSYTFDNPYTPLDRLRPTSSSVLPPREEACAATTATNRAVSPSRGY
MSDSIDSPFGSGSDITTTVGRTSNYNPNVLAPNPSERAPNLASWYTSAANTEETFSTTTT
PSLLPKAHEPSRPWVGKVSEEVTPSTAGGSLYIQQPQYNSVVIDPQPMPSGVSRVSASLP
RSYMRSDSTRLNSVVMPRPFGSQSTSVASLPPANTAPLMAESQKSVNGETDFIKKLSAPS
RYIQVMTSEDKAHSLSSSTHNSGEEEEEEEEEEEEEKKRGVTPTLATTLVPTLAPSPVPS
QARSPSPALQTPKVAYTAPVSPLPTKDTNQESYADMRISLNQKPNSSRDFGFQTEWDSTG
AHVTSIQPGSPAELCQLQVGDEVMSVSGQRVAEMSYGKWKSSTEQALQQGSLTMDIRRHG
RNNWDRDLPSLPFKSHKTINLTSMDHHPTVIGFPDTTTVNTTTSLDFTSRRSMETTKKVT
TQPIIGVASNGVNGGFRDETVTMRNKEPISMKNFKRRSEFFEQGGSESAKSDMPVASIAH
SSNRLSCDPEEERRRQEKWQKEQERLLQEKYRRDQEKLEEEWRRAQQETVTEGGRHHQEE
PRGLEMDSRSISPLSPLRQPIMPWEDKEAQEEERGRRVEEEAQRRLEEEERRRVEEERQK
WEEGRRTEEKEQELLPLQEERQREKQEDEERRQGQKEELRWQRRKEGEREERRCQEAAEQ
QHREKEKMQEQQQQWAKSKSTPVLDDVEKTKGWYGSSGGMAQRLLEEELRRKADKKAQSL
RAASELELERRNILNTMRYREPERVTSSCGIGEGLGRKGQQSVPQAELERQQILQEMKKK
TNLATDNSWIRQRSTSTTNRKDPTASPIRRGESLDNLDTAPRSSWRSSWTPGSTSSIPNY
SRPHFALSGLKTTSSYSGVAYGGGGYGSGVGSRPGLATLPSSLSMSSLREARGCNLSSWS
LRSPSPSPTPSLGPEPESRQSSHQRSRSVSGKKVCTFCDTVLGKGAAMIIESLGLCYHLT
CFKCIDCKSDLGGSEAGAEVRIRNRQLYCNSCYMRFKTGQPTSM
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggacagtaacaaggattcgctgcactaccgccgctcgttggtcatcgcaccc
aaaacgaccacacagttcaaccagttcctgcccaccaaggacaagccggcggcctacgtg
ccagcacctctccgcaagaagcgggccgagcgccacgaggacagccgccgaagctgggcc
agccccaagtacactgaggaggatggcaccttcaccagactgctccaaaagtatgacgtt
gctagcgatgggagcaaatcaatgacagaccttgcggtggaccaggaggccctgaagcag
gtgcgctacgaggagctacagaagatccgagagcaggtcaaggagaacgaagaccagtgg
caggatgatctcaccaagtggaaaaaccgtcgcaagagcttcaactctgatattgtgaag
aagaaagaggagagggagcagaccacaacgagcagcggaatagggagccacagtttccag
aattccaattggagctccatcggcagtcgcctcaactccctcgcctctctggaccaggaa
gtgtttgaagactctgccccggtcctccgcaccctccctccgaggagctacaccttcgac
aacccctacacccctcttgaccgcctcagacccactagctcctccgtgctccccccaagg
gaggaggcgtgcgctgccaccacggcaaccaacagggctgtctcgccttctaggggctac
atgagtgacagtatcgacagtcccttcggttctggtagcgacatcactaccactgtgggt
cgcacctccaactacaaccccaatgttctagccccgaatccttcagagagagccccaaac
ctggcctcatggtacaccagtgcagccaatacggaggaaaccttcagcaccaccaccacc
cccagcctactacccaaagctcacgagcccagtcgcccatgggtggggaaggtgtctgaa
gaagtgaccccatccactgctggtggctctctgtacatacaacagccacagtacaactcg
gtggtgatagacccacagcccatgccttctggtgtgtctcgggtttctgcctctctcccc
aggagctacatgagatcggacagcactcggctcaactctgtcgtcatgccaaggcccttc
gggagccagtctacaagcgtcgcatcactgccacccgccaacaccgctcctctgatggct
gaatctcagaaaagtgtgaacggagagacggatttcatcaagaagctgtcggcccccagc
cgctatatccaggtcatgacctctgaggataaggcgcactccctctccagctctacccac
aacagtggagaagaagaagaagaagaagaagaagaagaagaagaagaaaaaaaaaggggt
gtgacccccacacttgccacaacacttgtccctaccctggccccttctcctgtcccttct
caggccaggagtccttcacccgccctccagaccccaaaagtggcctacacagccccagtc
agtccgttacctacaaaagacactaaccaggagagctacgctgacatgcggatcagtctc
aaccagaagcccaacagcagtcgagactttggcttccagacagagtgggactccactgga
gcacacgtcacctccatccaaccaggcagcccagccgagctgtgccaactgcaggtgggc
gacgaggtgatgtcggtgagcgggcaaagggtggcagagatgagctacggcaagtggaag
agcagcacagagcaagctctgcagcagggaagccttaccatggacatacgccgtcacggc
aggaacaactgggacagagacctaccttccctgccgtttaaaagccataagaccatcaat
ctgaccagtatggatcatcatccaacagttataggtttccccgacacaaccaccgttaac
acaaccaccagcttggatttcacctctcggcgatccatggaaaccaccaagaaggtcact
acccaaccaatcattggtgtagcatccaatggagtgaatggaggcttccgtgacgagaca
gtgaccatgagaaacaaagaacccatatccatgaaaaattttaaacggaggtcagagttt
tttgaacaaggaggatcagagtcagcaaaatcagatatgcccgttgcctccatcgctcac
tcctctaaccgcttgtcctgtgacccggaggaggagcgcaggaggcaggagaaatggcag
aaggagcaggagagactcctacaggagaaataccgtcgtgaccaggagaaactggaggag
gagtggcgtcgggcccagcaggagactgtgacagaagggggaagacaccaccaagaggag
ccgaggggcctggagatggacagcaggagtatcagccccctctcccccctccgccagcct
atcatgccctgggaggacaaggaagcccaagaggaggaaagggggaggagggtagaggag
gaagcacagagaagactggaggaggaagagaggaggagagtggaggaggagagacaaaag
tgggaggaggggaggaggacggaggagaaggagcaagagctgctgcctcttcaggaggag
aggcagagggagaagcaggaggatgaggagaggagacaggggcaaaaggaggagctgaga
tggcagaggagaaaggagggggagagggaggagaggaggtgccaggaggctgctgaacaa
caacacagggagaaagagaaaatgcaggagcagcagcagcaatgggcaaagtcgaaatct
actccagtgctggacgacgtggagaaaactaaaggctggtacggcagctcggggggcatg
gcccagaggttactggaggaggagttgagacgtaaagcagacaaaaaggcccagagtctc
cgggctgcatcagaactggagttggagaggagaaacatcctaaacaccatgagatacaga
gagccagaaagagtgactagcagctgtgggataggcgaaggattggggaggaagggccag
cagagcgtaccccaggcagagctggagaggcagcagatcctgcaggagatgaagaagaag
accaacctggccacagacaacagctggatccgccaacgctccaccagcaccaccaaccgc
aaggaccctactgccagccccatcaggagaggcgagtctctggacaacctggacaccgcg
ccccgttcttcctggcgctcgtcatggacaccgggaagcacctcgtccatccccaactac
agccggcctcattttgccctttctggcctcaaaactacatcctcctatagtggtgttgcc
tacggtggtggtggctatggcagcggggtcggaagtcgtcctggcttagccaccctgccc
tcctccctctccatgagctccctcagagaggccagggggtgtaacctatcttcctggtcc
ctgcgctcaccctcgccatcccccaccccttctcttggccccgaacccgagtcacgccaa
tcctcacatcaacgcagcaggtcagtgagtggcaagaaagtctgtacgttctgtgacacg
gtgctgggcaagggagccgccatgatcatagagtccctgggactctgctatcatttgacc
tgtttcaagtgtatcgactgtaagtctgacctaggaggatcggaggccggagctgaggtc
agaatacgtaaccgacagctctactgtaactcctgctacatgcgattcaaaactggacag
ccaacgtccatgtga
DBGET
integrated database retrieval system
