Oncorhynchus keta (chum salmon): 118368411
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Entry
118368411 CDS
T09424
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118368411 (srrm1)
03015 mRNA surveillance pathway
118368411 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118368411 (srrm1)
03041 Spliceosome [BR:
oke03041
]
118368411 (srrm1)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118368411 (srrm1)
Spliceosome [BR:
oke03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
118368411 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
118368411
NCBI-ProteinID:
XP_035608371
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All DBs
Position
35:complement(34280168..34303675)
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AA seq
870 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVVKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDDEKKEKENRERESPRRRKSRSQSPRRRSPVKR
ERKRSHSRSPRRKPSPSSSPPPPAPAVTLVSVTLPQSTEEPQPEPDTSESTIPEPVIQEA
SSTSDVVKPDTVVVVPDSVTEVKEPSPDKAPKKERPKPREREKDSRRDRPHHRSRSHSRS
RRRPRSRSRSYSPRRRPSPRRRLSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSSSGS
SSTSHSPHKKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPSGKTQRSASPRARKG
RASASPSRSAGSKKKPGTRNDSPSPVPKPRQSEASESEGATADSVQQRRQYRRQNRETSS
EAGSSSSSEGEGSKRPGRGPVARNGDVRRRRSHSPSSPRRRHRDGSPRKRRSPSPGGRRS
PPRRRRSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPSPKRL
SPVPKRRPSRSPKRRSPPPQKRRTPPSSTSPPRHRRSPMLPSNRPGRDTRSPPLAHSNRL
SPSPANRGRTSPQGRFDTSPPGQRRQVSPSHGNRAIRRVSRTPEPRKNQRGSQSPQPMRR
VSSRSPSGSPKPGALKRPASGSPSPGHSASGSPPAPPAKKASSGSGSPSPNKNSDTEPGG
KKNKKKKKEKKHKKEKKHKKHKKHKKEKCDVPVAAGDDQENQGMEGDAASNPKKESDSEV
EECLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggtttcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaaaaaggtggatatg
accaaggtgaacctggaggtcgtcaaaccttggatcactcagcgggtgacagagatcctg
gggttcgaggatgacgtcgtcatagaatttatatttaaccagctggaagaaaagcacccg
gacagtaagatgatgcagatcaacctgactggcttcctgaatgggaagaatgcccgagag
ttcatgagggacctgtggcctctgctgctcagcgctcaggacaacatcgccggtatccct
tccgccttcctggagcagaagaaagaggagatcaaacagagacagattgagcaagagaag
ctcgcttctctgaagaagattgatgatgagaagaaggaaaaggaaaacagagaaagggag
agccccagaaggaggaagtcaaggtcacagtctccacggcgacgatctccagtgaagagg
gagaggaagcgcagtcactcccgttcaccgaggcgtaagccaagtcccagcagctcccct
ccaccaccagccccagctgtcacccttgtcagtgttaccctgccccagagcactgaggag
ccccagcctgagccagacacctcagagagcaccatacctgagccagtcattcaggaggcc
tcctccaccagtgatgtggtaaagccggacactgtggttgtggtacctgactctgtgact
gaggtcaaagaaccctccccagataaggctcctaaaaaggagaggcccaagcccagggaa
agggagaaggacagcaggagagacaggccccaccaccgctctcgctcccattcccgctcc
cgcagacgacccagatcacgctccaggtcttactccccccggcggaggccgagccccagg
agacggttgtcccctcggcgtaggagcccccccagacgtggccccccaggccccagacac
aggcgcagtcgctcccctgtccgcagacggcgctctcgctccccatcatcctctgggagc
agctccacatctcactcacctcataagaaggcaatgaagagaacgtcaaccacaccaccc
agaaaacagccccgcggccatgcagctgatccctcccttagcccctccaggagaagagcc
cccaatggcagcccctctgggaagacacaacgctctgcctccccgcgggccagaaagggc
cgggcctcagcctccccatccagatcagctgggtcaaagaagaaaccaggaacgaggaac
gattcaccgtcccctgttccgaaacccaggcagtctgaggcatcagagtcagagggggct
acagccgattctgtgcagcagcgacgtcagtatcgcaggcagaatcgggaaacgtcttca
gaggctggatcatcatcatcctcagagggtgaggggtccaagaggccgggcagggggcca
gtggcgaggaacggggatgtcaggcggcgacgcagtcactcgccctcctctcccaggaga
cgacaccgggacggctcccccagaaaaagacgctctccatcccccggaggacgcagatct
cccccaaggcgtcgcagatctccctctcctcctcctaggcgcaggtctccctctccacca
cctcgcagacgctccccctcccccagacggtactctccacccatccagcggcgatacagc
cccactcctttgggcccacagaaaagaaggctgtcagggtctccctctcccaaacgccta
tccccggtgcccaagcgccgtccctccaggtcccctaagcgcaggagtccccctccccaa
aagagacgcacacctccctcgtccacctctccccccagacacaggagaagccccatgctc
ccatccaaccgaccaggccgggacactcgctcacccccccttgctcacagtaaccgcctg
tccccttcccctgccaaccgtggccgaaccagtcctcaggggcgctttgacacctctcca
cctggacagaggcgccaggtgtccccctcacacggcaacagggcaatccgcagggtgtcc
cggacaccagagccccgcaagaaccagagaggctctcagagcccccagccgatgaggaga
gtgtcatcaaggtcaccgtctggttcccctaaaccaggagccctgaaacggccagcttca
ggctccccttctccaggccactcagccagtggatccccacctgcacccccggctaaaaag
gccagcagcggctctggcagcccttctccaaacaagaattctgacactgagcctggagga
aagaaaaacaagaagaagaagaaggaaaagaaacacaagaaggagaagaagcacaagaaa
cacaagaaacacaagaaggagaagtgtgatgtgccggttgctgctggggatgaccaggag
aaccaggggatggagggcgacgcagcctccaacccaaaaaaggaatcagacagtgaagta
gaagaatgtctggacgacctggagaagcacctgagagagaaggcactgcgttccatgagg
aaagctggaaagctgtcccctccactgtcctga
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