KEGG   Oncorhynchus keta (chum salmon): 118368414
Entry
118368414         CDS       T09424                                 
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03082  ATP-dependent chromatin remodeling
oke03083  Polycomb repressive complex
oke04110  Cell cycle
oke04330  Notch signaling pathway
oke04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    118368414
   03083 Polycomb repressive complex
    118368414
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    118368414
   04350 TGF-beta signaling pathway
    118368414
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    118368414
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oke03036]
    118368414
Enzymes [BR:oke01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     118368414
Chromosome and associated proteins [BR:oke03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     118368414
   HDAC complexes
    Sin3A-HDAC complex
     118368414
    BRAF-HDAC complex
     118368414
    REST complex
     118368414
    SHIP complex
     118368414
    MiDAC complex
     118368414
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     118368414
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    118368414
  Chromatin remodeling factors
   NuRD complex
    118368414
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 118368414
NCBI-ProteinID: XP_035608377
LinkDB
Position
35:34360438..34373260
AA seq 497 aa
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSAIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEEDPNKRISIRAHDKRIACDEE
FSDSEDEAEGQGGGRRNAASFKKAKRTKTEEDKEGEEKKAGDEKKADEKKEVKEEKVPDE
EKMDTSTKGPKEESKTP
NT seq 1494 nt   +upstreamnt  +downstreamnt
atggcgctgagttctcaaggaacaaagaaaaaagtttgctactattatgatggtgatgtt
gggaattactactatggccagggccaccccatgaagccacaccgtatccgcatgacacac
aacctcttgctgaactatggtctctacagaaagatggagatataccgacctcacaaagcc
aatggtgaggagatgaccaagtaccacagtgacgactacatcaagttcctgcgttccatt
cggccagacaacatgtcagagtacagcaaacagatgcagagatttaacgttggagaggat
tgccctgtgtttgatggcctgtttgagttctgccagctctcaacaggaggctctgttgct
ggagctgtgaagctgaacaaacagcagacagacattgccattaactgggccggaggcctc
catcatgccaagaagtcggaggcgtcaggtttctgctatgtgaatgacattgtgctcgcc
attctggagttactgaaataccaccagagagtcctgtacattgacattgatatccaccat
ggagatggagtggaggaggcgttttacaccacagacagggtcatgactgtgtccttccac
aagtatggagagtacttccccggcaccggagacctgagggatattggcgccgggaagggc
aagtactatgctgtgaattaccctctgagagatggtatagacgacgagtcttacgaagcc
atattcaaacctatcatggctaaggtgatggagatgtaccagcctagtgcagtggttctt
cagtgtggagctgactccctctcaggagacaggcttggctgctttaacctcaccatcaaa
ggccatgctaagtgtgtggagtacatgaagagcttcaacctgcccctgctgatgctgggt
ggtggaggctacaccatccggaacgtggcccgctgctggacctatgagacagctgtggcc
ctggacagcgccatacccaatgagcttccatacaatgattactttgagtactttgggccg
gacttcaaactgcacatcagcccctctaacatgaccaaccagaacaccaatgactacctg
gagaagatcaagcagcgtctgtttgagaacctgcgcatgctgccccatgccccgggggtc
cagatgcaggccatcccagaagatgctgtgcaggaggacagtggcgacgaggaggaggaa
gaccctaacaaacgcatctccatccgtgcccacgataagaggatagcatgtgacgaggag
ttctccgactctgaggacgaggctgagggtcaagggggcggacgcagaaatgcagccagc
ttcaagaaggccaagaggaccaagactgaggaagacaaagagggtgaggagaagaaagca
ggtgacgaaaagaaagctgatgagaagaaagaagttaaagaagaaaaggtgccagatgag
gagaaaatggacacctccacaaaggggccaaaagaggagtccaagacaccgtga

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