Oncorhynchus keta (chum salmon): 118368556
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Entry
118368556 CDS
T09424
Name
(RefSeq) WD repeat-containing protein 43-like
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118368556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oke03009
]
118368556
Ribosome biogenesis [BR:
oke03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
118368556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Utp12
WD40_CDC20-Fz
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WDR55
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_Aladin
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_ACSF4
WD40_2
Beta-prop_HPS5
Beta-prop_WDR75_2nd
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
118368556
NCBI-ProteinID:
XP_035608642
LinkDB
All DBs
Position
35:45774938..45823537
Genome browser
AA seq
647 aa
AA seq
DB search
MADGGCNPSLRLPCVFSPKSRQYLASFAQDGRLRIWNTDSKILHQEYVPSAHLSATCTCI
VWGPCRIAKEGPRRKKRKSEAGHVEDLADLLALGTVAGSIIIYSAVKGALHCTLDGGHNG
GVNCVEWHPEDGLLYSGSDDSYIVEWDLQTSKTRCKWKADRASVTSLCVSPDGKLLLSAG
QTIKMWDLKTKEVYRKFTGHSTAVTNLRFATTRPPDSNGLYFLSGAAQDRLISVWQVQED
SNDKNSVVSFTLTDDPQHIDLFTSNSKEEAVRLAVVCKDGQLHLFEHFLNGPCKKPLSPS
CTVQMSGLEDIPVPVPLLAVALTADTRSLLLAYGSYLQPVMERLDVNTAERHVCLTRNVH
TTLTIAMETTVSKVKTPVVNAKSKVLVPGLPGHQAPVKATLGSEKRKKGTDTKEMSIEER
LGEINLSREKGGVKETPSLQTDNFAVLLVQGLESKDANILNNVFQTRKDNLIKKTVSRLP
IPAVLPLVEELTKRMQGHPYMAVLMVRWLKAVLMQHTSYLSSLPDLVSQLGVLYHMIESR
VKMFHKLTKLHGKLYLLMTQVVTGDSGVTDVDHKAKLVYEDASSDEDKASGDEGLPDEDS
DNWEEDGIEDETMEDEHREEETEEGMRTESKANGDSDMEPGNESEEE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtggatgcaatccttcgttgcgtctaccctgcgttttctcgccaaaatca
cgccaatacctagcttcatttgcccaagatggcagactccgtatatggaacacagatagt
aaaatacttcatcaagaatacgtgccttcagcccacttgagtgccacttgtacctgcata
gtttggggaccatgccgaatcgccaaggagggacctcggaggaagaagaggaaatcagag
gcagggcatgtggaggatttggcggatctgttggctctgggaacagtggcgggcagcatt
atcatttacagcgcagtgaagggggcactgcactgcacactggatggaggtcacaatggg
ggcgtgaactgtgttgagtggcaccctgaggacggcctgctctacagcggctcagacgac
tcctacatcgtagagtgggacctgcagacaagcaagacccgctgtaagtggaaggcggac
cgtgcgtcagtgaccagtctgtgtgtgagtcctgatggcaaactgctgctctcagcggga
cagaccatcaagatgtgggacctcaagaccaaggaggtgtaccggaagttcacaggtcac
tccacagctgtgacgaacctgcgcttcgccaccacgcgtcccccggacagcaatggcctc
tacttcctgtccggggcggcccaagacaggctcatcagcgtgtggcaagtccaggaggac
agcaatgacaagaactcggtggtgtccttcaccctgacggacgacccccagcacattgac
ctcttcacttccaacagcaaggaagaggcggtgaggctggcggttgtgtgtaaggatggg
cagcttcatctctttgagcactttctgaacgggccttgtaagaagccgctgtccccctcc
tgtacagtccagatgtctgggcttgaggacatccccgtgcccgttcctctgttggccgtg
gccctcaccgcggacacacgcagcctcctgcttgcctatggcagctacctgcagccagtc
atggagagattggatgtgaacacagcagagagacacgtctgcctaacccgcaatgtccac
accaccctcaccatcgccatggaaacgactgtttccaaggtgaaaaccccagtagttaac
gccaagagcaaagttcttgtccctggtcttcccggtcaccaagcgccggtcaaagcaact
ttgggatctgagaagaggaaaaagggcacagacaccaaagagatgtccatagaggagcga
ctgggagagatcaacttgtcacgtgagaagggcggagtcaaggaaaccccctctctgcag
actgacaacttcgcggtgctactggtgcagggtctggagagcaaggacgccaacatcctc
aataatgtgtttcagacccggaaggataacttaataaagaaaaccgtttcccggttaccc
atccctgccgttttgccattggtggaagagctcaccaagagaatgcaagggcatccatac
atggcagtgctgatggtgcgatggctcaaggctgttctcatgcagcacacctcctacctg
tcctcgttgccagacctggtttctcagctgggagtgttgtaccacatgattgagagcaga
gtcaaaatgttccacaaactgaccaagctgcacggcaagctctatctgctcatgacacag
gtggtgacaggtgacagtggtgtcacagacgtggaccataaggccaagcttgtctacgag
gacgcgtcctctgatgaagacaaggcttcaggcgatgaaggtcttccagacgaagattct
gataactgggaggaggatggcatagaggatgagactatggaagacgagcatagagaagaa
gagactgaggaaggcatgaggacggaatccaaagctaacggcgattctgacatggaaccg
ggaaacgagagcgaggaagagtga
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