Oncorhynchus keta (chum salmon): 118368604
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Entry
118368604 CDS
T09424
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118368604
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118368604
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118368604
NCBI-ProteinID:
XP_052351723
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Position
35:50411321..50546407
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AA seq
540 aa
AA seq
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MHMALFCIEGPPGLQGDKGDQGDQGPRGLPGLPTLAALHSNQILTVKGDQGSAGPPGPPG
PPGPPGPRGPPGDTGKDGPRGVPGLPGDPGTPGELGLMGPEGPPGQKGSLGPPGIPGVDG
LKGEMGERGEKGDMGEDGQKGEVGEKGDAGSSAAGIKGEPGESGRGGSKGEPGLPGLPGL
PGIKGEPGFLGPQGEPGLPGLPGTKGERGELGPPGKGERGEPGQAGQKGGPGEAGNPGPR
GSKGETGDKGDLGSMGPWGPPGQKGDQGATEIIDYNGNIQEALQKITTITVTGPPGPPGL
SGPAGIKGDQGMPGLPGLDGERGFKGSKGDMGIPGTSGDKGTVGLPGLPGVNGLKGDKGD
SGLPGPEGPSIIGQPGAPGPHGPPGPMGPHGFPGPKGEAGNHGLKGVRGESGHKGDRGPL
GLPGASGLDSKPGIRGMDGPVGSSGPAGPKGDRGERGAAGELGPRGPYGLPGAAGTPGLD
GLPGLRGEKGDPGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgcacatggccttgttctgcattgagggtcctcctggtcttcagggtgacaagggggat
caaggcgaccaaggaccgcggggattgcctggtctccctacactggctgctttgcacagc
aatcagatcctgactgtcaagggagatcagggttcggcaggtccaccagggcctcctgga
cccccaggtccccctggcccccgagggccaccaggggacacaggcaaggatgggccccgg
ggagtgccaggtctgccgggagatcctgggaccccaggagagctaggactaatgggacct
gaggggccaccaggacaaaagggttccctcgggcctcctggcatcccaggtgttgatggg
ctgaagggtgaaatgggagagcgaggtgaaaagggtgacatgggagaagatgggcaaaaa
ggtgaagtcggggagaagggtgatgcaggctcctctgctgcaggcattaagggtgaacca
ggagagtcaggacgtgggggatcaaagggagagccaggacttccagggctgcctggactt
cccgggattaagggtgagcctggattcctaggacctcagggagaaccagggctcccagga
ctaccgggaaccaagggcgagcgaggggaacttggcccaccaggcaagggagagcggggc
gagcctggacaggccggtcaaaagggggggccaggagaggcagggaacccaggccctaga
ggttcaaagggagagacaggagacaagggagacctgggctctatgggaccatggggaccc
cctgggcagaaaggtgaccaaggagccactgaaatcattgattacaacgggaacatccaa
gaagctttacagaagattaccactattacagtgacgggtccccctgggcctcctggacta
tcaggaccagcgggaatcaagggagatcaaggcatgcctggcctccctggactggacggt
gaaaggggtttcaaaggttccaaaggagacatgggaatccctggcacatctggagataaa
ggaactgttggtttacctggtttaccaggtgtcaatggattgaaaggagataagggtgat
tctggtctgcctggccccgaagggccctcaattattggccaacctggagcacctgggccc
catggccccccaggccccatgggaccccatggctttcctggaccaaagggggaggctggg
aatcatggtctgaagggagtacgcggggagtcagggcacaagggagacagaggacccctg
ggcctccccggagcctccggcttggacagcaagcctggaattaggggtatggacgggcct
gttggttcctccggtccagccgggccaaagggggacagaggtgagagaggagctgcaggt
gaactcgggccaaggggaccttatggacttcctggagcggctggaacacctggccttgat
gggttgccaggcttaaggggagagaaaggcgacccgggggaaagaggagaaaagggggag
aagggaaagaagggcaaaaaagggcctaagggggagaaaggagaacagggtgcccctgga
ttagatgcaccctgcccattgggcccagacggactaccaatgcctggttgttggcaaaag
tga
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