Oncorhynchus keta (chum salmon): 118368684
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Entry
118368684 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03020
RNA polymerase
oke03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118368684
09124 Replication and repair
03420 Nucleotide excision repair
118368684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118368684
03400 DNA repair and recombination proteins [BR:
oke03400
]
118368684
Enzymes [BR:
oke01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118368684
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118368684
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118368684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
118368684
NCBI-ProteinID:
XP_035608878
LinkDB
All DBs
Position
35:57485822..57502079
Genome browser
AA seq
1967 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEHDSEDITKEKGHGGC
GRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPKFSR
PEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIA
EDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSAR
TVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNG
DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTFRM
NLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA
VRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIR
THSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMGHDV
TRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNE
LEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQV
IAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGR
EGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQ
NMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKEDRE
ILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVQGVQELSKKLVIVN
GEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIAHPG
EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLL
GQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPDFDV
TRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS
DENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITE
EGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELNH
VISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASS
HGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFG
SAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYSPA
WSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSP
TSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPSSPNYTPTSPSYSPTXPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY
SPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTS
PKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKYS
PTSPTYSPTSPKGSTYSPLSPGYSNPSPSFTLTSPAISPDDSDEENN
NT seq
5904 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtctgtcacagaagggggaatcaag
taccccgagaccacagaaggagggcgtcccaaactcggtgggttgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgtcaaacatgtgcaggtaacatgacagaatgcccg
ggccacttcggccacatagagctggcaaagccggtgttccacgtgggcttcgtcaacaag
atcatgaaggtcctccggtgtgtctgctactcctgttccaagctgctggtcgacacgaat
aatccaaagatcaaagacatcctacagaagtccaaggggcagcccaggaagcgtctgacg
cacgtgtatgacttgtgtaaaggcaagaacatctgcgagggcggagaggagatggataac
aagtttggagtggagcacgacagtgaggacatcactaaggaaaagggccatggtggctgc
gggcgctaccagccacgtatccgccggtcgggcctggagctgtatgccgagtggaagcac
gtgaacgaggactcgcaggagaagaagatcctgctgagccccgagcgtgtctacgagatc
ttcaaacgcatctcggacgaggaggacgtcatcctgggccttgatcccaagttctcccgg
cccgagtggatgattgtcactgtactccctgtgccgccgctagctgtccggcccgccgtc
gtcatgcagggctctgcccgtaaccaggacgacttgacgcacaagctggccgacatagtc
aagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccacgtcatcgcc
gaggacgtgaagctgctgcagttccacgtggccaccatggtggacaacgagctgccaggc
ctgcccagggcaatgcaaaaatcgggccgcccgctcaaatccttaaaacagcgtctgaag
gggaaggaggggcgagtccgaggtaacctgatggggaaacgtgtggacttctccgcccga
acagtcatcacccccgaccccaacctgcagatcgaccaagtgggcgtcccgcgctccatc
gccgccaacatgactttcccagaaatcgtcacaccctttaacatcgacaggttacaggag
ttggtgcgcagaggcaacagccagtatcctggagccaaatatatcatccgagacaacggg
gacagaatcgacttgcggttccaccccaaaccaagtgaccttcacctccagatcggctac
aaggtggaaagacatatgtgcgacggtgacatcatcatcttcaacagacagcccacttta
cataaaatgtctatgatggggcacagagtccgaatccttccctggtccaccttccgaatg
aacctcagtgtaaccactccgtacaatgctgactttgacggggatgagatgaacctgcat
ctccctcagtccctggaaacgagagctgagatccaggagcttgccatggtgcctcgtatg
atcgtcactccccagtccaacaggcccgtcatgggcatcgtgcaggacaccctcaccgct
gtgcgcaagttcaccaaaagggacgtcttcctagagaggggcgatgtgatgaacctcctg
atgttcctgtccacgtgggacggcaaggtgccccagccagccatcctgaaacccaggccg
ctctggacgggcaagcagatcttcagccttatcatcccgggccacatcaacgccatccga
acacacagcacccacccagacgaggaggacagtgggccctacaagcacatctctcccggg
gacaccaaggtgatagtggagaacggagagctgatcatgggcatcctgtgtaagaagtca
ctgggtacctctgctggctccctggtccacatctgtttcctggagatgggccacgacgtc
acccgcctcttctactccaacatccagacggtggtcaacaactggctgctcattgagggt
gcctctatcggtattggtgactccattgctgatgcgaagacgtacctggacatccagaac
accatcaagaaggccaaacaggatgtaatagaggtcattgagaaggcccacaacaacgag
ttggagcccacccctggcaacacgctgaggcagacatttgagaaccaggtgaatcgcatc
ctaaacgacgcccgtgacaaaacgggttcctccgcccagaagtccctgtctgagtacaac
aacttcaagtctatggtggtggccggctccaaaggctccaagattaacatctctcaggtt
attgcggtggtggggcagcagaacgtggagggtaagcgtatccccttcggcttcaagcac
cgaactctcccccacttcatcaaggatgattacggccccgagagcagaggcttcgtggag
aactcatacctagccggcctcacgcccacagagttcttcttccacgccatgggtggcagg
gaggggcttatcgacacggctgtgaagaccgccgagactggttacatccagcgtcgtctg
atcaagtccatggagtctgtgatggtgaagtacgacgccacggtgaggaactctatcaac
caggtggtgcagctgcgctacggagaggacggcctggccggggaggctgtggagttccag
aacatggccacgctcaaaccctccaacaaggccttcgagaagaagttcagatttgactgc
accaacgagcgggctctgaggcgcaccctgcaggaggacgtggtgaaggacgtgatgacc
aacgcccaggtgcaaagtgccctggagagggagtatgagaagatgaaggaggacagagag
attctgagggccatcttccccactggggacagcaaggtggtgctgccctgcaacctggcc
aggatgatctggaacgcccagaagatcttcaggatcaacccccgcacccccacagacctc
aatcccctacgagtcgtgcagggtgtccaggagctgagtaagaagttggtgattgtgaac
ggcgaggaccacctgagtagacaggcccagcagaacgccacgctgctcttcaacatccac
ctgcgctccacgttgagctcccgacgcatgacagacgagttcagactgagcaccgaggcc
tacgactggctgctgggggaaattgagtccaagttcaaccaatccattgcccatccgggt
gagatggtgggggcgttagctgcccagtctttgggagagcccgccacccagatgaccctg
aacaccttccactacgccggcgtgtcggccaagaacgtcaccctgggcgtgccgcgtctc
aaggagttgattaacatttccaagcggcccaagaccccgtccctcaccgtgttcctgctg
ggccaggcggcccgcgatgccgagagggccaaggatatcctctgtcgcctggaacacacc
accctcagaaaggtgacagccaacacggccatctactacgaccctaacccccagagtacg
gtggtgacggaggaccaggagtgggtcaacgtctactatgagatgcctgacttcgacgtg
acccgcatctccccctggctgctccgcattgagctcgaccgcaaacacatgactgaccgc
aagctgaccatggagcagatcgctgagaagatcaatgcaggtttcggcgacgacctgaac
tgtatcttcaatgacgacaacgccgagaagctggttctgcgaatccgcatcatgaacagc
gacgagaacaaattccacgaggacgaggaggtggtggacaagatggacgacgacgtgttc
ctgaggtgcatcgaatccaacatgctgacggacatgacgctgcagggcatcgagcagatc
agcaaggtgtacatgcacttgccccagacggacaacaagaagaagatcatcattacggag
gagggagagttcaaggccctgcaggagtggatcttggagacagatggcgtgggactgatg
agggtcctcagcgagaaggatgtggaccccgtcagaaccacttccaacgacatcgtagag
atcttcacggtactgggtatcgaggctgtgcgcaaggctctggagagggagttgaaccac
gtcatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctttgcgacacc
atgacctgccgcggtcacctgatggccatcacgcgtcacggcatcaacagacaggacacg
ggacccctcatgaagtgctcctttgaggagactgtggatgtgctgatggaggcgtcgtcc
cacggggagagtgaccccatgaagggtgtgtctgagaacatcatgctgggccagctggcc
ccctgcgggacgggctgcttcgacctgctgctggacgctgagaagtgcaaatatggcatg
gagatccccaccaacatccccgggatcagcgtggctggacccaccggaatgttctttggc
tctgcgcccagccccatgagtggcatgtctccagccatgaccccctggaacactggagcc
acccccgcctacggtgcctggtcccccagcatcggcagcgggatgacccctggagctgca
ggcttttctcccagtgcagcgtccgacgccagtggcttctctccgggctactccccggcc
tggtcccctacccctggatctcctggttccccggggccggccagcccctatatcccctct
ccaggaggtgccatgtctcccaactactcccccacgtccccggcctacgagccccgctct
cctgggggatacaccccgcaaagcccgggctactccccaacctccccctcgtactcccca
acctccccttcttactctcccaccagccccaactacagccccacctcaccctcctattca
cccacctcccccagctactccccgacctcaccctcatactcccctacatcccccagttac
tcccccacctccccctcttactcccccacctccccctcttactcccccacatctccctcc
tactcccctacctcccccagctacagccccacgtctccaagctacagccccacatcgcct
agctactcccctacctcaccctcttactcacctacctccccctcctattcacccacttca
ccctcctactcacctacctccccctcctattcccctacctccccctcttactcccccacc
tctccaagctacagcccctcttcacccaactacacccccacctcgcccagttactccccc
accntcccctcttactcccccacctctccctcctactcccccacctcccccaattacacc
cccaccagccccaactactcccctacctccccctcttattctcccacctctccgtcctac
tctccctctagtccgcgcttcaccccccagtcgcccacctacacccccagctctccctcc
tacagccccagctctccttcctactcacccacctcccccaaatacacacctacgtcccct
tcttactcccccagctctccagagtacacgcccacctcccccaaatactcccccacctcg
cccaagtactccccgacctctcccaaatactcacccacctccccgacttactccccgacg
acccccaagtacagccccacgtcgcccacctactcccccacctcgcccacctacaccccc
accagccccaagtactcccccacctccccaacctattccccaacctcacccaaatactct
cccacctcccccacctactcgcccactagccccaaagggtccacctacagccccctgtcc
ccgggctacagcaacccctcgcccagcttcaccctcaccagcccggccatcagcccagat
gacagtgacgaggagaacaactga
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integrated database retrieval system
