Oncorhynchus keta (chum salmon): 118368761
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Entry
118368761 CDS
T09424
Name
(RefSeq) ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118368761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118368761
03009 Ribosome biogenesis [BR:
oke03009
]
118368761
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118368761
Spliceosome [BR:
oke03041
]
Complex A
U2 snRNP components
U2 related factors
118368761
Complex B
118368761
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
118368761
Ribosome biogenesis [BR:
oke03009
]
Eukaryotic type
90S particles
Helicases
118368761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SRP54
AAA_25
Glyco_hydro_98M
nSTAND3
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
118368761
NCBI-ProteinID:
XP_035609017
EnsemblRapid:
ENSOKEG00005038906
LinkDB
All DBs
Position
35:59399518..59432166
Genome browser
AA seq
750 aa
AA seq
DB search
MLQNSTKDASYMHVGSILRLAIRRDRDRDRDERSKDRDRDRDAKLSGMALNPAVGSAGLS
HKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILGRHQSFVLVGETGSG
KTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFED
CSSAKTFLKYMTDGMLLREAMNDPLLERYGVVILDEAHERTLATDILMGVLKEVVRQRSD
LKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMC
EEEEGDCLLFLTGQEEIDEACKRIKRDIDDLGHDAGDIKIIPLYSTLPPQQQQRIFEPPP
PRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKAS
AQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHF
DFMDPPAPETLMRALELLNYVAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSN
EILSITAMLSVPQCFVRPTEARKAADESKMRFAHIDGDHLTLLNVYHAFKQNHESTQWCY
DNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFTSRDYYINIRRALVTGFFMQVAHLE
RTGHYLTVKDNQVVQLHPSTVLDHKPEWVMYNEFVLTTKNYIRTCTDIKPEWLVKIAPQY
YEMGNFPNCEAKRQLERIVAKLSTKEYSQY
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgttacagaacagtacaaaagatgcatcatacatgcacgtgggtagcatcctgcgcttg
gccataaggcgagaccgcgacagggaccgcgacgagcggtcgaaggacagggacagagac
cgggatgccaagctctctggcatggccctgaacccggctgttggcagcgcaggcctctcc
cacaagcagacggccatgcagcagcagatcaacccgttcaccaacctgccccacacgccg
cgttactacgagatcctgaagaagaggctgcagctgccagtgtgggagtacaaggagcgc
ttcaacgacatcctgggacgccaccagagtttcgtgctcgtcggagagacgggctccggc
aagaccacgcagatcccccagtggtgtgtggacatggttaaggggttgggcggacctaag
aaggcagtggcctgtacccagcccaggagggtggcagccatgagcgtggcccagagggtg
gctgacgagatggacgtcatgctgggccaggaggtcggttactccattcgattcgaggac
tgcagctcggccaagaccttcctcaagtacatgacagacggtatgttgctgcgggaggcc
atgaacgaccctctgctggagcgctacggcgtcgtcatcctggacgaggcccacgagaga
acgcttgccacagacatcctcatgggcgtcctcaaagaggtggtccgacagaggtcagac
ctcaaggtcatcgtcatgagcgccacgctggatgccggcaagttccaggtgtactttgac
agctgtccgctgctaaccataccgggacgcacgcacccggtagagatcttctacacgccg
gaacctgagagggactacctggaggcagccatccgcactgttatccagatccacatgtgt
gaagaggaagagggcgactgtctgctcttcctcactggacaagaggaaatcgacgaggcc
tgcaagcgcatcaagagggacatcgacgacctgggacacgacgcgggtgacatcaaaatc
atcccgttgtactcgacgctgccgccccagcagcagcaaaggatctttgagccgccacca
ccccgcaagcccaacggagccatcgggaggaaggtcgtggtttcgacaaacatcgctgag
acatccctgaccattgacggtgtggtgtttgtaattgatcccggatttgccaagcaaaag
gtgtataaccctcgtatcagagtggagtccctcctggtgacagccatcagcaaagcctcg
gcccagcagagggcggggcgcgccgggaggacacgcccagggaagtgcttccgcctctac
acagagaaggcctacaagaccgagatgcaggacaacacatatccagagattttgaggtcc
aacctgggctcggtcgtgctgcagctcaagaagctaggtatcgacgacttggtccatttc
gacttcatggacccaccagcaccggaaaccctgatgcgggccctggagctgctcaactac
gtggcggcgctcaacgatgacggcgacttgacggagctaggctccatgatggccgagttc
cccctagacccgcagctagccaagatggtgattgcctcctgcgagttcaactgctccaat
gagatcctgtccatcacagccatgctgtcagtcccacagtgcttcgtacgacccacggag
gctaggaaggcggccgacgagtccaagatgcgtttcgcccacattgacggagaccacctg
accctcctcaatgtctaccacgccttcaaacagaaccatgagtcgacacagtggtgctac
gacaactttgtgaactacaggtcgctgatgtcggccgacaacgtgcgccagcagctgtcc
cggatcatggaccgcttcagcctgccccgccgcagcacagagttcaccagcagagactac
tacatcaacattcgcagagcgctggtcacaggattcttcatgcaggtagcccatttggag
cgtacaggccactacctgactgtgaaggacaaccaggtggtccagctgcacccctccact
gtgctggaccacaagccggagtgggtgatgtacaatgagtttgtgctgaccaccaaaaac
tacatccgcacctgcaccgacatcaaaccagagtggctggtgaaaatcgccccgcagtac
tatgagatgggaaacttccccaactgtgaagccaagagacagttggagcgcatcgtagct
aaactctcaaccaaggaatactctcagtactaa
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integrated database retrieval system
