Oncorhynchus keta (chum salmon): 118368872
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Entry
118368872 CDS
T09424
Symbol
acin1b
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer 1b
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118368872 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
118368872 (acin1b)
03015 mRNA surveillance pathway
118368872 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118368872 (acin1b)
03041 Spliceosome [BR:
oke03041
]
118368872 (acin1b)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118368872 (acin1b)
Spliceosome [BR:
oke03041
]
Complex C
Other components
EJC/TREX
118368872 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
118368872
NCBI-ProteinID:
XP_035609219
LinkDB
All DBs
Position
35:complement(66294662..66329148)
Genome browser
AA seq
1434 aa
AA seq
DB search
MADEDVTLDGKSLQSLRVADLKAALEHRHLPKSGAKNALIKRLKGALMLENVKKTSTSHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRQRLEREAREAAEADGETGPEEEEEEEDEEE
EEDTEQDNDSASYHPDKHFPIPSQPPLNRAEEGGGGGTMMIGQGMMSQGMGKGTMSRRPH
FGPGSVPQESPDAPGSWTQQRLSLHTGLRHEELTTPSPPRAVASLSVRVLGDPERQGLPP
SMPPRAQENEGTSPAADDRPAHYVLHLSRSARAAASAGGNRVQEDSDDDDSSEEDEDEWG
PAAGARRGGGGRGRSPPPRPQQPSPSIPVGRERSRRKLQPPQHIPPQQVVHQPPQLRQPT
PPPSPPPELSFPLPDTPKQSPPDMDEEPEGAGAGVAVRSPPGGLQRHDSDSSSRSSSPEP
LAQRRPGPLSLLARKMASEGAFGKRGEGASDGQTGPGGESSGSGDGGSIVPGAGPGVGVV
LFPGAAITHIGGSSAGHSGTVPVPEVPAPVSMFGSGAQFHPLSLVSGAAVPGITLTAEPQ
GTSGETAQKRMEKEEKQVESESCLPPWKHGRDVTSVSLPFGSGGSEVPAVHQGDSPKKSP
FGRDEPLSSPPGSTSCLPALAPKKPRMFSDTSSGSMASPPKPGQQGSVVVTTPGEPPLKQ
EVLVSGAQQDTDNTIEVTSPNKASAEKSGGKNGGEIVKMEKESDSQAEKATLKAGETRRR
GPEEAVEVEPMGPALPPSYPGKGEEEKKRKEDVRKKEEERCRQRKRASDRRSSPSSGGDS
SSSDSDSGSSSSHSSASTSSRDKRKKSVPGKGRGDERRRLEKGGEKKQPFREKKQSSLSE
PSGPGPMEVERPDPEDSRAPQPTPEGDTENSEGRMEESTTPKALATRNISLTSSKTSPEG
AGEAESGTAAGRKRRWGSCTAVTTKKPSISITTDSLKSLIPDIKTSQEAVMDLHPDDSQL
SGDEDTSTTREDQGLDKDLKIRRTVTQVVPGESHENGQGEREEEEEENKRECERTHKEKR
KNSYSEDGIVCQSSTTHDANAKKVTPSDTLVRRSISQQKSGVSVTIDDPVRTDKLPSPPR
GKVSNIVHVCNLVRPFTLGQLKELLNRTGSVVEEGFWIDKIKSHCYVTYSSTEEAVATRT
ALHRVKWPQSNPKVLSVDFCEQNELDFHRGLLTVDPREEHRPQPAVGPGGPKVRPGGLPP
LMPERDGRADRGAVGGVRDQWAEREREMERRERTRAEREWDRDKVRDFGGKPGEERERGR
RSRSLDRERRRKEREGKEKKTDKKAVPTDEPPVKLLDDLFNKTKAAPCIYWLPLTEEQAN
QRGKEREERQKERERRRKEQQEEEDKKREEEKKERMKSREEGGAAVSTGGGSVRGPEGDR
DREGERGRDREGERGRDGDKRKDIGGFKPKGPDIKPLSGFRHSRSRSNLRDRRR
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgttacgctggatggtaaatcgctacaatcgctccgtgtggcggat
ttgaaagccgctttggagcatcgacacctccctaaaagcggggcaaaaaatgcgctcatt
aagcgactgaagggggctctgatgttggaaaatgttaagaagacttccacttcccacatt
gggctccagcccaactcccagattggggaggagatgagccagaacagcttcataaagcag
tacctggctcagcagcaggagctccttcgccagaggctggagagagaggcccgggaggcg
gcagaggccgatggggaaacaggcccagaggaggaggaggaggaggaggatgaggaggag
gaggaggacacagagcaggacaacgacagtgcttcctaccatcctgacaagcatttcccc
ataccctctcagcccccactgaaccgggccgaggaaggaggtggaggagggacaatgatg
attgggcaaggaatgatgtcccagggtatgggcaaagggacaatgtctcgcagaccacac
tttggcccaggctccgtgccccaggagtcccctgacgcccctggctcctggacacagcag
cgtctctcactccacactggcctccgccacgaggagctcaccaccccctcaccaccccgc
gctgtggcctccctgtctgtgcgtgtcctgggggaccccgagcgccagggcctgccaccc
tccatgcccccccgcgcccaggagaatgaaggcacctccccggcggctgacgaccgcccc
gcccactatgtgctccacctcagccgctccgctcgggcagcagccagcgccgggggtaac
cgcgtccaggaagacagtgatgacgatgacagcagtgaggaggacgaagatgagtgggga
cctgcggcgggggcaagaagaggtggcggtggaagaggacgttcccctccccctcggccc
cagcaaccttcccccagcatcccagtcggccgagagaggtccagacgcaagctccagcct
ccgcaacacatcccccctcagcaggtagtacaccagcccccacagctccgccagcccacc
ccgcccccctccccacccccagagctctcctttcctctacccgacacccccaagcagagc
ccgcccgacatggatgaggagccagaaggagcaggggctggggtagccgtccgctcccct
ccaggtggcctccagaggcacgactctgactccagctcccgctccagcagcccagagccc
ctggcccagcggcggcccggaccactctccctgctcgcccgcaagatggcttccgaggga
gcattcgggaagagaggtgagggtgcctcagacggccagacaggtcctggtggggagtcg
tccggatcaggagatggcggtagcattgtcccaggagcaggaccgggggttggggtagtc
ctgttccctggggctgctatcacccacatcggaggcagcagcgcagggcactccggaacc
gtccctgtacccgaggtccctgcaccagtgtctatgtttggatcaggggcccagttccat
cctctctctctggtgtctggagcagctgtcccaggcatcaccctcactgcagagccccag
ggtacatctggagagacggcacagaagaggatggagaaagaggagaaacaggtagagagt
gagagttgcctgccgccatggaagcacggacgggatgtgacgtctgtgtccttaccgttt
gggtctggggggtcagaggtgcctgcggtgcaccagggggacagcccgaagaagtcaccc
ttcggcagggacgaacccctctcctctcctcccggctcaacctcctgtctgcctgctctc
gcccccaagaagccccgcatgttctccgacacctcatccggctccatggcatcccctcct
aaacctgggcaacaggggtctgtggtggtgaccacgccaggggaaccccccctcaaacag
gaagtcctcgtctcaggggcccagcaggacacagacaacaccatagaggtcacctcaccg
aacaaggcgtccgcggaaaagtctggagggaaaaatggaggagaaattgtaaagatggag
aaggagagtgacagccaggcagaaaaggcgacactgaaagctggcgagaccaggagaaga
ggacctgaagaggctgttgaggttgagcccatggggcctgctctgcccccctcttaccca
ggtaagggagaagaagagaagaagcggaaggaagatgtgaggaagaaggaagaagagcgg
tgcaggcagaggaagagggcgagcgacaggaggtcgtcgccctccagcggtggcgactct
tcatcctccgactcggattctggatcctcttcatcacattcctctgcctccacctcctcc
cgggacaaaagaaagaaatctgtcccgggaaaaggaagaggggatgaaaggagaagactg
gaaaaaggaggagagaagaaacagcctttcagggagaagaagcagtcttccctgtcggag
ccgtccggccctggccctatggaggtggaaaggccagacccagaggactccagggccccc
cagcccacccccgaaggggacacagagaacagtgagggccgcatggaggagagcaccact
cctaaagccttggccacccgcaacatctctttaaccagcagtaagacgtctccagaggga
gcaggagaggcagagtctgggaccgccgcggggaggaagaggaggtggggatcctgcacg
gccgtcaccaccaagaaaccctccatcagcatcaccacagactctctaaagtctctgatc
ccagacatcaagaccagtcaggaggctgtgatggatctccacccagacgacagccagctg
tctggggacgaggacacctccaccaccagggaggaccagggcctggacaaagaccttaag
atcagacgcaccgtcacacaggtggtcccaggggaaagccatgagaatggccagggagaa
cgagaggaggaagaggaggagaataaacgggagtgtgagaggacacacaaagagaagcga
aagaacagctactcagaagatggcatagtgtgtcagtcctccacaacacatgacgccaac
gccaagaaagtcactcccagtgatactctggttcgtcgctccatcagtcagcagaagtct
ggtgtgtctgttaccatcgacgatccagtccgcacagacaaactgccctctccgcccaga
ggcaaagtctccaacatcgtccacgtctgtaacctggtgcgacctttcaccctgggccag
ctgaaggagctgctgaacaggacaggctctgtggtggaggagggcttttggatcgacaag
atcaaatctcactgctacgtcacttactctagtacagaggaggctgtggccacacgaact
gctctgcacagggtgaagtggccccagagcaaccctaaggtcctcagtgtggacttctgt
gagcagaacgagctggacttccacagaggtctgctgaccgtggaccccagagaggagcac
cggccccagcctgccgtgggtcctggaggtcccaaagtccgaccgggggggctgccccct
ctgatgcctgaacgggacgggcgcgcggaccgcggggctgtcggaggggtgcgggaccag
tgggcggagagagagagggagatggaacgccgggagaggaccagggcggaacgcgagtgg
gaccgggacaaggtgcgagacttcggaggcaaaccaggagaggagagggagagagggagg
agatctcgctccctggatagagagaggaggcgaaaagagagggaagggaaggagaagaag
accgacaaaaaggctgttccaacagatgaacctcctgtcaaactactagacgacctcttc
aataagaccaaagcagctccctgcatatactggcttcccctcactgaggaacaggcaaac
cagagggggaaggaacgggaagagcgacagaaagaacgagagaggaggaggaaagaacag
caggaggaggaggacaagaagcgagaggaggagaagaaggagagaatgaaaagtagagag
gagggaggtgctgcggtcagcactggaggtgggagtgtccggggacctgagggagacagg
gacagagagggggagcgagggagggacagagagggggagcgagggagggatggggacaag
aggaaggacattggtggtttcaaacccaaaggtcccgatattaaacccttgtcggggttc
cgacactcccgtagccgtagcaacctcagagacagacgccgctga
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