Oncorhynchus keta (chum salmon): 118369538
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Entry
118369538 CDS
T09424
Name
(RefSeq) TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118369538
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
118369538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
TOR1L1_N
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
118369538
NCBI-ProteinID:
XP_035609883
LinkDB
All DBs
Position
36:complement(6483595..6550938)
Genome browser
AA seq
1856 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAIQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPSPKPKEESCADFSPEDSSSDRLSFYCFDISRLLKHGASLLGS
AGVEFEVQDDKSGEVDPKERLARQRKLLQRKLGLDMGAAIGMDTMELFNDEDLDTQYTCT
PSGPKAQGQGERGSEPCSSSGNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRS
RDMDPNERSNDSFEGEPEEKHRKTSNVVIEQPATEHKVLIDNFPDNSSLLDETQEWPLES
FCDELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVGSTAEQMARHHQEWLEDVVIR
LLCVFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMTDSGVAMTVDILLKLLTEDQWEV
RHGGLLGIKYGLAVRQDLISALLPRVLPAITQGLQDLDDDVRAVAAAALIPVVDGLVQLL
PNKVPFIVNSLWDALLELDDLTASTNSIMTLLSSLLAYPQVRQCSMQQSLTVLVPRVWPF
LRHTISSVRRAALETLFTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQK
VWTELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKSRCKEKAGGKPRQG
ALVQVKETVQEYIAGAETVTEDPVTRDYVVTRARLMAAKLLGALCRCICDPQLNSSSQDI
RPAESLGQLLLFHLNSKSALQRIVVALVLCEWAAVQKVVSAMVQPRLLAILSEQLYYDEI
AIPFTRMQNECKQLIALLADAQIDVSDRLNCSVFTIDQANELVTTIFAESTVGLDTKSKQ
FHPLDSKRQQAQSTVGETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAAKR
EENTLVQGYAASFIAKLLQQCATRQPCPNSKIVKNLCSSICMDPLLTPSSACPVPPTQTA
KAGMSEKECMHHMVNKTKGIITLYRHQRAAFVITSKRGPTPKTSKTPTTELPPGSTITTD
TDENKKPFLVQRRGAEFSLTTVARHFGQELTGSLPYLWEFVVGPLRAVVENNQGIDAKLQ
LERGDAAAQELVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAARCVG
VLSKIATMETMHLFLECVLPWLGCIEDGTKQEGAIEAMACVMEQLDVDIVPYIVLLVVPV
LGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFMEQLLDSR
KLENYKIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHYL
RAQEYAKTKAADCTPLPSLVVCPPTLTGHWVDEVGKFCTDEYLNPLHYTGPPTERARLQH
QVKKHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVIL
SGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEA
LHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVSVEDTISTA
SIHEEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRDIQH
SPKLSALKQLLLDCGLGSSGSGEGTEAVVAPHRVLIFCQLKSMLDIVEHDLLKPQLPAVT
YLRLDGSVPTGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRD
LQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVISQENASLQSMGTDQ
LLNLFTLDKEGKDDKGESSSGGKASIKNVLDGLGDLWDQQQYETEYNLDSFMHSLH
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgtcaaggcttgatcgtctgttcatcctgcttgacactggaactacaccggtg
acgaggaaggctgctgccatacagctgggagatgtggtcaaactccacccgcatgagctc
aacaaccttttgtcgaaggtgttgacatacctgagaagtccaaactgggacactcgtatc
gctgcaggtcaggcagtggaggccattgtgaagaatatcccagagtggaacccgtcaccc
aagcccaaagaagagtcgtgtgcagacttctccccagaagactcctcctctgaccggttg
agtttctactgctttgacatttcccgcctgctcaaacatggtgcttctctgcttggttcc
gccggtgtggagtttgaggtccaggatgacaagtctggtgaagtggaccctaaagagcgt
ctggcccgccagaggaagctgttgcagaggaagctgggactggacatgggtgccgccatc
ggcatggacacgatggagctgttcaacgacgaggacctggacacccagtacacctgcacg
ccgagtggccctaaggcccagggacagggagagaggggctctgaaccctgctccagctcc
ggcaatcacgtgcccatgcaggcggcagagataatagactcagagtttcgaccaggcatg
agcaaccgacagaagaacaaggcgaagaggatggccaagctagtggcaaagcaacgatcc
agagacatggatcctaacgagagaagtaatgacagttttgagggggagcctgaggagaag
cacaggaaaactagtaacgtagtcatcgagcaaccggcaacggagcataaagtcttaatc
gataactttccagacaactccagtctcttggacgagacccaggagtggcccctggagagc
ttctgtgatgagctctgtaatgacctcttcaacccctcatgggagattcgtcacggagca
ggcacaggcctcagggagatcctcaagtctcaaggcgctggaggtgggaagctggtggga
agcactgcagaacagatggcgcggcaccaccaggagtggctggaggatgtggtcatccgg
ctgctctgtgtctttgctctggaccgtttcggagattttgtctctgatgaggtggttgct
ccggttcgagagacctgtgcccagacactgggcgtggccttgcgccacatgactgacagc
ggtgttgccatgacagtagacatcctactgaagctgctgacggaggaccagtgggaggtc
cggcacgggggtcttctgggcatcaagtatggcctggcagtcagacaggacctgatatcc
gctctgcttccacgggtgctccctgccatcacgcaggggctgcaggacctggatgatgat
gttagagcggtggcggccgcggccctcatccctgtggtggacgggttagtgcagctactc
cccaacaaggtcccattcatagtgaactccctgtgggacgctctcctggagcttgatgac
ctgacagcctccaccaacagcatcatgaccctactgtcctctctgctcgcctaccctcaa
gtccgacagtgcagcatgcagcagtccctaacggtcctcgttcctcgggtctggccattc
cttagacacaccatatcatcagttagacgggccgcactagagacccttttcaccctacta
tccaaagctgaccagagctgtgcattatggctcaaccaggtcctgcaagacatgctccga
cacatcttccagtcctgcatcctggagagcaatcaggagatcctggacctcatccaaaag
gtgtggaccgagctgctgcgccaggcccctcagcagtacgtagtagcagccagctgtccc
tggatgggcgcctggctctgtctgatgatgcaagcctctcacatccccatagacatcaac
atgctgctggaagtcaagtctcgctgcaaggagaaggctggtgggaagcctcgccaggga
gccttggttcaagtgaaggagactgttcaggagtacatcgccggggcagaaactgtgacc
gaggacccagtgacgcgggactatgtggtgacacgggctcgactcatggccgctaagttg
ttgggggccctgtgtcgatgtatttgcgacccgcagctcaattcatcctcccaggacatc
cggccggctgagtcgctgggccagctgctcctcttccacctcaactccaagtctgccctg
cagcgcatcgttgtggccctggtcctctgtgagtgggccgccgtgcagaaggtggtgtca
gccatggtccagccccgcctgttagccatcctgtcagagcagctgtactacgatgagatc
gccattcccttcacacgcatgcagaacgagtgtaagcagctcatcgccctgctggccgac
gctcagatcgacgtgagcgaccgcctcaactgcagcgtgttcactatcgaccaggccaac
gaactggtgaccaccatcttcgcagagtccaccgtgggcctggatacgaagtccaaacag
tttcatccactggacagcaagcgtcagcaggcccagtccacggtgggcgagaccagtgtg
gagtggcagcagctgcacctgcgcgtccacatgttcaccgcctgcgccgtggtcaacctg
caggcgttaccagacaagctgaacccagtggtgcgtccgctcatggaggcagctaagcgg
gaggagaacaccctggttcagggttacgccgcctccttcatcgccaagctgctgcagcag
tgtgctactaggcagccgtgtcccaattccaagatcgtcaagaacctgtgttcgtcgatc
tgcatggaccccctactcacgccctcctcggcctgccccgtgccccccactcagactgcc
aaagctggcatgtcggagaaagaatgcatgcaccacatggtcaataagaccaagggcatt
atcaccctctaccgccaccagagggcagcatttgtcatcaccagcaagaggggccccacc
cccaaaacctccaagacccccaccactgaactgccacccggcagcaccatcaccacagat
actgatgagaataaaaagccatttctcgttcagagaagaggtgccgagttctctctgacg
acggttgccaggcactttggccaggagctgacggggtcactgccctatctgtgggagttt
gtggtgggacctttgagggccgtggtggagaacaaccaaggcatcgatgcaaagctccag
ttggagaggggggatgctgcagcccaggagctggtcaactctctgcaggtgctggaggtc
acggctggagccatggcccccgagctcaaacctctgttgttggagcacctgccccacctg
ttcacctgtctgcagcacccgtacacggccgtgcgtcacatggcggcgcgctgcgttggt
gtgctcagtaagatcgctaccatggagaccatgcacctgttcctggaatgtgtgctgccc
tggctggggtgcatcgaggatggcactaagcaggagggggccatcgaggccatggcctgt
gtgatggagcagttggatgtggacatcgtgccgtacattgtgctgctggtggtgccggtg
ctgggccgcatgagtgaccccagtgatagtgtccgtttcatggccacgcagtgctttgcc
accctcatccgcctgctaccactggaggcgggtatcccggatcctcccaccatgtcggat
gatctgattcgccagaaggccagagagcgtcacttcatggaacagctgctggacagcagg
aagttggagaactacaagatccctgtgcccatcaaggctgagctccgcaagtatcagcag
gatggagtgaactggctgtccttcctgaataagtacaagctgcatggtatcctgtgtgac
gacatgggcctgggcaagaccctgcagtccatctgcatcctggctggggaccactacctc
agggcacaggagtatgccaagaccaaggcagcagactgcacccccctgccctctctggtg
gtgtgcccccccaccctgacgggtcactgggtggacgaggtgggcaagttctgcaccgac
gagtacctgaaccccctgcactacacaggaccccccacggagcgagcacggttacagcat
caagtgaaaaagcacaacctagtagtagcctcttacgatgttgtacgaaacgacatagac
ttttttaggaatataaaattcaattactgtatcctcgacgagggccatgtgatcaagaac
gggaagaccaagctctctaaggccattaagcagttggcggccaacttccgagtcatccta
tcaggaacacccatccagaataatgttctggagctgtggtcgctctttgacttcctcatg
cccggcttcctgggcacagagcgccagtttgctgcccgctacggcaagcccatcctggcc
agccgtgacgccaagagctcgtcgcgcgagcaagaggccggggtgctggccatggaggcg
ctgcatcgccaggtgctgcccttcctcttgaggagaatgaagaaggacgtgctgcaggac
ctgccccccaagatcatccaggactactactgcaacctcagccctctacaggttcagctg
tatgaggactttgccaagtcccgggccaaggtcagtgtggaggacaccatctctacagcc
tccatccacgaagaggagaagcccaagctgaaggccacgggccacgtgttccaggctctg
cagtacttgcggaagctgtgtaaccacccaggcctggtactgctgccacagcacccagag
tacaagcgcatcacagaccagctggcagcacaacactccagcctccgagacatccagcac
tcgcccaaactctcagctctcaaacagttgttgttagactgtggtctgggcagcagcggc
tcaggggagggcacagaggcggtggtggccccgcacagagtgctgatcttctgtcagctg
aagagcatgctggacatcgtggagcacgacctgctcaagccccagctgcccgccgtcacc
tacctgcgactggacggcagcgtcccgactggcctgcgccactccatcgtctccaggttc
aacaacgacccctccatagacgtgctgctgctcaccacccacgtgggcggtctgggtctg
aacctgaccggcgctgacacggtggtgtttgtggagcacgactggaaccctatgagagac
ctacaggccatggaccgcgcacacaggataggacagaaacgcgtggtgaacgtgtatcgt
ctgatcacgcgtggcaccctggaggagaagatcatgggcctgcagaagttcaagatgagc
atcgccaacactgtcatcagccaggagaacgccagtctgcagagtatgggcaccgaccag
ctcctcaacctcttcaccttggacaaggaagggaaggatgataagggcgagtcgtcctct
ggagggaaagcctccattaagaacgtgctggacggcctgggggacctgtgggaccagcag
cagtacgaaaccgaatacaacctggacagcttcatgcactcgctccactag
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