Oncorhynchus keta (chum salmon): 118369586
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Entry
118369586 CDS
T09424
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04120
Ubiquitin mediated proteolysis
oke04137
Mitophagy - animal
oke04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
118369586 (prkn)
04120 Ubiquitin mediated proteolysis
118369586 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
118369586 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118369586 (prkn)
04121 Ubiquitin system [BR:
oke04121
]
118369586 (prkn)
03029 Mitochondrial biogenesis [BR:
oke03029
]
118369586 (prkn)
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
118369586 (prkn)
Membrane trafficking [BR:
oke04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
118369586 (prkn)
Aggrephagy
Other aggrephagy associated proteins
118369586 (prkn)
Xenophagy
Other xenophagy associated proteins
118369586 (prkn)
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
118369586 (prkn)
Mitochondrial biogenesis [BR:
oke03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
118369586 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR
IBR_1
ADAMTS_CR_3
Rad60-SLD
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
118369586
NCBI-ProteinID:
XP_035609970
LinkDB
All DBs
Position
36:complement(9796998..9893676)
Genome browser
AA seq
458 aa
AA seq
DB search
MIVYVRFNSSHGFPVELEEGASIAVLKEKVGRLQGVQPEQLRVIFAGRELLSDCTLQGCD
LPEQSTVHVVLPPPGSGRCSDLALQHRLGRGVDSLTRLDLTASRLPTTSTGLAVILETDD
EQRAREEPEHTEPRPHSSFYVYCKSVCRAIQPGKLRVRCRACKQGTLTLSRGPSCWDDVL
LPERIHGVCQSEGCLGRVAEFYLKCAAHPTSDDDTSVALDLVMPNVRDVPCIACTDIMSP
VLVSQCPDRHVICLDCFHMYCVTRLNERQFIHHPDVGYSLPCAAGCPESLITELHHFRAL
GDEQYERYQQYAAEECLLQMGGVLCPAPGCGAGLLPEEDKRMIQCLLSNGLGCGFVFCRD
CKEGFHEGECHVRSSPVSGGALQGYVVDEEAALQARWEQASQETIDETTRPCPHCKVPVE
KSGGCMHMVCPRAQCKFEWCWICRVEWNRECMGNHWFG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgtatgtaaggtttaactccagccatggcttcccagtggagctagaggagggg
gccagcatcgcagtgctgaaggagaaggtggggaggctgcagggggtacagccggagcag
ctgagagtcatctttgctggcagagagctgctcagcgactgcactctccagggctgtgac
ctcccagagcagagtaccgtgcacgtggtgctgcctcccccggggtcgggccggtgctct
gacctggccctgcagcaccgtctgggtcgaggggtggacagcctcacccgcctggacctc
accgcctcccgcctgcccactacctccaccggcctggctgtcatactggaaaccgatgac
gagcagagagccagggaagagcctgaacacacagagcccagacctcacagcagcttctat
gtgtactgcaagagtgtgtgccgggccatccagccggggaagctacgcgtgcgctgccga
gcctgcaagcagggaaccctcaccttgagccggggcccgtcatgttgggacgatgtcctc
ctcccagagcgtatccatggcgtctgtcaatcagagggttgccttggcagagtagcggag
ttttacctgaagtgtgctgcccaccccacctctgatgatgacacgtctgtggccctggac
ctcgtcatgcccaatgtgcgggatgtcccatgcattgcctgcacagatatcatgagtcca
gtgttggtgtcccagtgtccagaccgccatgtcatttgtctagactgcttccacatgtac
tgtgtgacccgcctcaacgagcgacaattcatccaccacccagatgtcggctactcactt
ccatgtgcagctggctgcccagaatctctcataacggagttgcatcacttccgagcccta
ggtgatgaacagtatgagcggtaccagcagtatgcagccgaggagtgtctcctccagatg
ggaggagtgttgtgtccagcccctggatgtggagcaggcctgctgcctgaggaggacaag
aggatgatccagtgtctgctcagcaacggtttggggtgcgggtttgtgttctgccgtgac
tgtaaggaaggattccatgagggggaatgtcatgtgaggtcatcacctgtctcaggagga
gccctgcagggttatgtagtggacgaggaggcagctcttcaggctcggtgggagcaggcc
tcccaggagactatagacgagaccacccgtccatgtccacattgcaaggtcccagtggag
aagagtggtggctgtatgcacatggtgtgtccccgtgcccagtgtaagtttgagtggtgc
tggatctgtcgtgtggagtggaacagggagtgtatgggcaaccactggtttggctga
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integrated database retrieval system
