Oncorhynchus keta (chum salmon): 118369671
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Entry
118369671 CDS
T09424
Name
(RefSeq) nuclear valosin-containing protein-like isoform X1
KO
K14571
ribosome biogenesis ATPase
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118369671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oke03009
]
118369671
Ribosome biogenesis [BR:
oke03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
118369671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Nucleolin_bd
AAA_lid_3
RuvB_N
AAA_16
AAA_5
AAA_2
AAA_22
AAA_14
AAA_33
TIP49
NPHP3_N
Mg_chelatase
AAA_28
RNA_helicase
nSTAND3
AAA_17
AAA_18
Rad17
IstB_IS21
ABC_tran
NACHT
Viral_helicase1
Vps4_C
Zeta_toxin
TsaE
AAA_3
Sigma54_activ_2
Cytidylate_kin2
Motif
Other DBs
NCBI-GeneID:
118369671
NCBI-ProteinID:
XP_035610153
LinkDB
All DBs
Position
36:13370779..13389815
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AA seq
888 aa
AA seq
DB search
MNNRRCGVDNRLKQRVEQYLSNQSGQYVDITSMAHDLQRLYRMDYGRRNKTAFRIQVEKV
HGVICDESGLNDLENKHLAKRARHSEKDAGDGSSNLDDTTDSDEDLPEQPPINLMNNSLM
SLYKKGNPESGASPRRDKSASDSPAPEAHSTPQSVGTKVSAGGWFIDKGRGLEHDSILID
LCEEEAASPAGNKQTDASMLEPEKTPKKGTFKKSKRQKEGASKGNDGDIEASIMNKKART
KSIELQYSTLKFEDVGGNEDTLTEVCKLLIHMRHPEVYQQLGVVPPRGFLLHGPPGCGKT
LLAQAVAGEMELPMLKVSAPELVSGVSGESEQKLRELFEQAVTSSPCILFIDEIDAITPK
REVASKDMERRIVAQLLTCMDDLNSLAVTAQVMVIGATNRPDSLDPALRRAGRFDKEICL
GIPDEAARLRILKTLCRKLKLPEDFDYRQLARLTPGYVGADLMALCREAAMSAVNRVLLE
RQDKNQGLVPMAEERAESEGPQGAGPLPQGPERFQASADTVIQEMTDLSHVPQGDKQQLP
LATETTFRGELCRLLSLLKSSESLSEEQLAGLCILMSDFQGSLASVQPSAKREGFATVPG
VTWEDVGALHDIREELTMAILAPVRSPEQFKALGLSAPAGVLLAGPPGCGKTLLAKAVAN
ESGLNFISVKGPELLNMYVGESERAVRQVFQRGRNSAPCVIFFDEIDALCPRRSGHESGA
SVRVVNQLLTEMDGLETRRQVFIMAATNRPDIIDPAVLRPGRLDKTLYVGLPPPSDRHAI
LLTITKGGSRPHLEQDVSLEEMAHDVRSDCFTGADLSALVREASVNALRAYLLTQPNPSY
TGHSYSNGPVADIRVSKQNFEDAFKKVRPSVSKKDQRMYEQLKESLTR
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgaataacagacgttgcggagtggacaaccgactcaaacagagagttgagcagtatttg
agtaaccagagtggccagtatgttgacattacttcaatggcacatgatcttcagagactc
tacagaatggactatggcaggcgaaacaagactgcattcaggattcaggtggaaaaagtc
catggagtgatatgcgatgaatctggactgaatgatctggagaacaagcacttggccaag
agagcgagacacagtgagaaggatgctggggatggcagcagtaacttggatgacactact
gatagtgatgaggaccttcctgaacaaccgcccatcaacctcatgaataactccctgatg
tccctgtacaagaaggggaacccagagagtggggcatctcccaggagggacaagtctgca
tcagacagccctgcccctgaggctcactccacccctcagagtgttggtaccaaggtgtct
gcagggggctggttcatagacaagggcagaggcctggagcatgacagcatcctcattgac
ctgtgtgaagaggaggcagccagtcctgcaggaaataagcagacagatgcctcaatgctt
gagcctgagaagacaccaaaaaaaggcacatttaaaaaatctaaacggcagaaagaggga
gcgtcaaagggcaatgatggtgacatcgaggccagtatcatgaacaagaaagcgaggact
aaatccattgaactacagtattcaacattaaagtttgaagatgttggaggcaatgaggac
acattgacggaagtgtgtaagctgctgatacatatgcgtcacccagaggtgtaccagcag
ttgggggtggtccctccacgggggttcctgctccatggcccccctggctgtggaaaaacc
ctgctggcccaagctgtggctggggagatggagctgcccatgctgaaggtgtcggcgcca
gagctggtgtctggggtgtcaggggagtctgagcagaagctgagagagctgtttgagcag
gctgtgaccagctccccttgcatcctgttcattgatgagattgatgctatcactcctaag
cgagaggtggcctccaaggacatggagagacggattgttgctcagctgctcacctgcatg
gatgacctaaactcattagcggtcacagcccaggtgatggttattggtgccaccaaccgg
ccagactctctggacccagcgctgcgccgggctggacgctttgacaaagaaatctgtctg
gggatacctgatgaagcagctcgtctcagaattctgaagaccctgtgtcggaagctgaag
ctccctgaggactttgactaccggcagctggcgcgtcttaccccggggtacgtgggagct
gacctcatggcgctgtgccgcgaggccgccatgagcgccgtcaaccgggtcctgctggag
aggcaggacaagaaccaggggctggtccccatggcggaggagagagcagagtccgagggg
cctcagggcgcaggtcctctcccacagggcccagagagattccaggcctcagcagacaca
gtgatccaggagatgacagaccttagccacgtaccacagggagacaagcagcagctgcct
ctggctactgagacaaccttcaggggggagctttgtcgcctgctgtccctgctgaagagc
agtgagtcgctatctgaggagcagcttgctggcttgtgcatcctcatgtcagacttccag
ggttccctggccagcgtacaaccctctgcaaagcgtgaaggcttcgccacggtgccaggc
gtcacctgggaggacgtgggggccctgcatgacatccgcgaagagctcaccatggccatc
ctggcccctgtgcgttctcctgagcagttcaaagctctgggtctcagtgctcctgcaggg
gtgttgctagctgggcctcccggttgtggaaagaccctgctggccaaggctgttgccaat
gagtcaggacttaacttcatctctgtcaaggggccagagctgctgaacatgtatgtggga
gagagcgagcgggccgtgcgacaggtgttccagagaggacggaactctgccccttgtgtc
atctttttcgacgagatcgatgcactgtgcccccgccgctccgggcacgagtctggagcc
agtgtccgtgtggtcaaccagctgcttactgagatggacggactggagacccggcggcag
gtcttcatcatggcggctaccaatagaccagatatcattgatcctgctgtgctgagacca
ggtcgtctggacaagaccctgtatgtgggcctcccacctccatcagaccggcacgccatc
ttactcaccatcaccaaggggggcagcaggcctcatctggagcaggatgtgagtctggag
gagatggcccatgacgtgcgcagtgactgcttcactggggcagacctgtctgcgttggtg
agggaagcctctgtcaatgctctgagagcctacctcctgacccaacccaacccatcttac
acaggtcacagctactccaacggccctgtggccgacatccgggtcagcaagcagaacttt
gaggacgccttcaagaaagtacggccgtctgtgtctaaaaaggaccagcgtatgtacgag
cagctaaaggaatctcttacaaggtga
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