Oncorhynchus keta (chum salmon): 118370048
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Entry
118370048 CDS
T09424
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118370048 (rbm39a)
Spliceosome [BR:
oke03041
]
Common components
Common spliceosomal components
General mRNP proteins
118370048 (rbm39a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_7
RBD_DEAH11
PRP38_assoc
CDC45
Motif
Other DBs
NCBI-GeneID:
118370048
NCBI-ProteinID:
XP_035610705
LinkDB
All DBs
Position
37:complement(1399579..1455770)
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AA seq
534 aa
AA seq
DB search
MADDFDIEAMLEAPYRKDEIKHSSPNGHKEHSKKKKKSRSRSRDRKRSKSRDHKKSHDHK
RSRSHERKRSRSRERRRSRERSGRYRDHKTTFSGPKFNGGSRGKIGPPPVIKLSRRRSRS
RSPFKKEKSPVRQVFLGEMTQKSSIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFF
SAVGKVRDVRMISDRNSRRSKGIAYIEFVEANSVPLAIGLSGQRLLGVPIIVQASQVMAE
KNRAAAMANNLQKGNAGPMRLYVGSLHFNITEEMLRGIFEPFGKIESIQLMMDSETGRSK
GYGFITFSDTECAKKALDQLNGFELAGRPMKVGHVTERTDASNASSFLDNDELERTGIDL
GTTGRLQLMARLAEGTGLQIPPAAQQALQMGGAIAIGAMAAVSAAMNPAMNMNMNTAMNL
PSQPLATHCFQLSNMFNPRSEDNPGWDVDIQHDVIEECNKHGGVVHIYVDKNSTEGNVYV
KCPSVPAAMAAVNALHGRYFAGKMITAAYVPLPTYHNLFPDSVKATQLLIPLAH
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgactttgacatagaagcaatgcttgaggctccatatcgaaaggatgagatc
aagcacagtagtccaaatgggcacaaggaacacagcaagaagaaaaaaaagagcaggagt
cggagcagagacaggaagagaagcaaaagccgggatcacaagaagagccatgaccacaag
cggagccgcagccacgagcgaaagcggagccgcagcagggagaggcgccggagcagagag
cgcagcggccgctacagggaccacaagaccaccttctctgggccgaaatttaatggtggt
tccagagggaagattggccccccacctgtcatcaagctaagccgaagacgttccagaagc
cgaagccctttcaagaaagagaagagtcctgtgaggcaagtgttccttggggagatgacg
caaaagagctcaatcaggcagccaatagacaacctgactccagaggaaagggacgctcgc
acagtgttctgcatgcagctggcagccagaatccgaccacgtgacctggaggagttcttc
tctgcagtgggaaaggtaagagatgtgcgcatgatctctgacagaaattcgaggaggtcg
aaggggattgcttacatcgagtttgtggaggccaactcggtgccactggctataggattg
tctggccagcgacttctgggggtgccaataattgttcaggcctcacaggtaatggctgag
aaaaacagggctgctgccatggccaacaacctgcagaagggcaacgctggcccaatgaga
ctctacgtcggatccttacactttaacatcacagaggagatgctacgaggaatatttgag
ccctttggaaagattgagagtattcagctcatgatggatagtgagacggggagatccaaa
ggatatggcttcatcactttctcagacacagagtgtgccaagaaggctttggatcagttg
aacggctttgagctggctggccggccgatgaaggtgggccatgtgactgagcgcacagac
gcctccaacgccagctccttcctggacaatgacgagctggagaggacaggcatcgacctg
ggcaccactgggcgcctgcagctcatggccagactggctgaaggcacgggactgcagatt
cccccagcagcacagcaagccctgcagatgggtggggccattgctattggtgccatggcc
gctgtatcagctgccatgaatcctgccatgaatatgaacatgaatacagctatgaaccta
ccctcacagccacttgctacacactgtttccagctgtctaacatgttcaaccctcggtct
gaagataacccaggctgggatgttgacattcagcatgatgtcattgaggaatgcaacaaa
catggaggagttgtgcacatatatgttgacaagaattccactgaaggcaacgtgtatgtg
aaatgtccatccgttcctgctgccatggctgcagtaaacgcattacatggtcgatatttt
gcaggtaaaatgatcacagcggcatacgtccctctcccaacatatcacaaccttttccct
gactctgtgaaggctacccagctcctgatccctcttgctcactga
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