Oncorhynchus keta (chum salmon): 118370426
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Entry
118370426 CDS
T09424
Name
(RefSeq) retinoic acid receptor RXR-beta-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03320
PPAR signaling pathway
oke04148
Efferocytosis
oke04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118370426
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
118370426
03320 PPAR signaling pathway
118370426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118370426
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oke03310
]
118370426
Transcription factors [BR:
oke03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
118370426
Nuclear receptors [BR:
oke03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
118370426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
118370426
NCBI-ProteinID:
XP_052370073
LinkDB
All DBs
Position
Unknown
AA seq
431 aa
AA seq
DB search
MSSHQPTSSASNSPTSTFGSPFSVISPSLGSPGVAPSMGYGPISSSQINSTMGMHSISSS
DDVKPPFGLRPMSAHSPGIMLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLS
YTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQKSVQEERQRIREREEGLE
CSSAVNEEMPVEKILEAETSVEQRAELHSDTGSAGSSPHDAVTNICQTADKQLFALVEWA
KRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGVLLANELHRDNAHSAGVAAI
FDRESVQSAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNTGEVEL
LREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL
MEMLEAPHQLA
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgcatcagcccaccagttcagcctccaacagtcccaccagcacctttggctcg
cctttctcagtcatcagcccctcactgggctcccctggtgtggcaccctccatgggttat
gggcctattagcagtagccagatcaactctacaatggggatgcactcaatcagcagctcg
gatgatgtcaaacccccgtttggcttgaggcctatgtctgcacacagccctgggataatg
ctctcccagaaacgcatgtgtgccatctgtggagaccgctcctctggtaagcactatggt
gtgtacagctgtgaaggttgcaagggcttcttcaaacgcacagtgcgcaaggacctgagc
tacacctgcagggataacaaagaatgcctggtggacaagcgccagcgcaatcgctgccag
tactgtcgctaccagaagtgtctggctatgggcatgaagagggaagtggtccaagatgaa
cgtcagaaatcagtccaggaggagcgtcagaggatcagggagcgagaggagggactggag
tgcagcagtgctgtgaacgaggagatgcccgtggagaagatcttggaggcagagacgtcc
gtggagcagagggcggagctccactctgatacaggctccgctggtagctctccccatgat
gcggtgacaaacatctgccagaccgcagacaagcagctgtttgcgttggtggagtgggcc
aagaggatccctcacttctctgagctgcccctggacgaccaggtcatcctcctgcgtgca
gggtggaatgaacttctgatcgcctccttctcacaccgctccatcgctgtgaaggacggg
gtcctgctggccaatgagctacaccgggacaacgcacacagtgcaggggtggcggccatc
tttgacagggagagtgtgcagagtgctgaggtgggagccatatttgaccgggttctcact
gagctggtcagtaagatgagagacatgcagatggacaagacagagctgggctgcctccga
gccatcgtcctcttcaacccagacgctaaaggtctgtccaacaccggagaggtggagctc
ctgagagagaaggtctatgcttcactggaagcctactgcaagcagaaataccccgagcag
cagggaaggtttgctaagctcctcctcaggctgccagcactgcgttctattggcttgaag
tgtttggagcacctgttcttcttcaagctgattggtgacacccctatcgacacgttcctc
atggaaatgcttgaagcacctcatcagttggcatag
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