Oncorhynchus keta (chum salmon): 118370970
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Entry
118370970 CDS
T09424
Name
(RefSeq) nuclear pore complex protein Nup153-like isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118370970
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
118370970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118370970
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118370970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Nucleoporin_FG
TackOD1
Motif
Other DBs
NCBI-GeneID:
118370970
NCBI-ProteinID:
XP_035612127
LinkDB
All DBs
Position
19:complement(18384084..18406284)
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AA seq
1481 aa
AA seq
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MPKLHFPWFSFNLKLPSKRTESLNSMVNAMTGQLEQLSGAESIFNLAMAATGGGKIRSRR
CHSASKPYAKSKQQQPGLISRVTDTVKSIVPSWLQKYFRNGEAAEGGGSVVRAEQNSQAP
PPNGSEEVAPLPDGRDTPEPGTSHTEPSTSRASLNFQDVLSRPPLNRSHLHFPSLDTSLA
RRGPSSLFSQPSTSSAPFVGASPSFSLVKEIKDNSSQHEDDNISTTSGFSSRASDKDVPN
SKTASLPQLWSPEMDRTHSGPQQSQSSLKKPAFNLSVFGTSSTVSVSQSSQSSTSTMNSS
VLNSSQLGDSPFYPGKTTYGGAASVRTARSRTAIPYQAPLRRQIKAKPAGAQPCGVTSAT
ARRILQSLERMSSPLADAKRIPSTVSSPLSTSLDGSTLHLSHFQAKKKLLDSPLPPVQKL
VIPAAASVSGNRSMSFRPSLTPGGLARTPRDTPTRQSPLIPEAVAGPSQSTSSILPTYPL
SSTPAFSSTGSGGGKMKRERTSTRPSSKRPEDQIAELSDLPAISLPHSPSFSLPSFSFFQ
PPTATVTPTAALTTSPVLEETIRNKVPPTTAPSTPPSTPFTFSSPIVMATAASPPSFSPS
SGFTFSAPVVKTGLSLSNGKMATPVLAAVKHAASESMDEFEGPYKPAKVLKQGSVLDLLN
GPGFAVPVTQTSPVPKAHQETPALSTNTPSLGDLFKATTGSWDCDTCVVQNKPTDSKCVT
SVTPRLNSGPSLAKTDSIPLLSRLEGSTTTTTPAATFGALFTKPAGSWDCDTCLVQNKPD
AVKCVACETTKPGTGVKASLTMPAFLEAKTLPAAAPLLGFGDKFKKPEGAWECGVCMVQN
KAQDTKCVSCGIAKPGATAAPHSLTPTPVSATPLLGFGAQFKKPEGAWECDVCCVENKGA
DKECVACQTPKPGAKVEPKAFGSSSFGIQSSSDSGGFKFGMGTSSDSGSGGFKFGGTLLD
SSSSGGFKFGASASSDSTSTDTSSSAGFKFGGSSEGCKFAASAASTPAVDEGKKAEAPGM
GAGFKFGVGGGLSFGTAAAASTESKPPYSGFSFHLVATSDSSSSTFSLPVSTENDSGAST
ETTTTTTTAAAPMFGKLAEAKATALTTPLGGSIFRESLDKDKAPSFTFGKHEKEVASMGS
GFLFSVPSKEGVASAPSTGFSFSKPDPPKDQPNAPALAFEKPEDQSETPAAESPKPSFSF
GQSTTDAAAPKPAFGFMASTTTTSSSSSSTPAPAPIPVPSTFLFGQSASTEATPAKSFLF
GQSQDSLPAPAVSLNPGPAQPFLFGSGPNAAAPSFTFGAAAPSTAAPSAAPAPFVFSPAS
STGFGSGQAPNFGQGTPHPSAPAFGSPAPSPFSATASQPPAFGAKPNSVPVFGHQANSTP
AFGSSVPTTPGGGFQFGGASVFGTSSNSTGVFAFGGAPGGSPAPSATPSIAPQPSAPGSG
FNFAAPPTFNIGSKSTTFTAAATGQHSIPGRKIKTAVRRKK
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaactgcatttcccgtggttctcttttaacttgaagcttccttccaagaggact
gagtcgctaaactctatggttaatgctatgacaggacagttggaacagctatccggtgcc
gagtcgatattcaatctagccatggcggccacgggtggagggaaaattagaagcagaaga
tgtcatagcgcttcgaaaccttacgccaaaagcaaacagcagcagcctggcctgattagt
cgagtgacagatacagtcaagagcatcgttccttcttggctgcagaaatacttcaggaat
ggggaggctgcagaggggggagggtccgtagtgagggcggagcagaacagccaggcccct
cccccaaatggcagcgaggaggtagcaccccttcctgatggacgggacactccggagccc
ggtaccagccatacagaaccttcgacaagcagggcatccctgaacttccaggatgttctg
tcaaggccccccctcaaccgctctcacctccatttcccctccttggacacctccctggcc
cgcaggggccccagctctcttttctcccagccctccacctcctctgcccccttcgttggg
gcctcgcccagcttctcccttgtcaaagagatcaaggacaacagctcacagcacgaggac
gacaacatctctaccaccagcggcttctcttcacgtgcatcagacaaagatgtacctaat
tcgaagaccgcatctctaccccagctctggtccccggagatggaccggacccactctggg
cctcagcagtcccagtccagtctcaagaagcctgcgttcaacctatctgtctttgggacg
tcctccactgtgagtgtcagtcagtcaagtcagtcctccacttctacgatgaacagttca
gtgctgaattccagtcagttgggggattcccccttctacccagggaagactacctatggg
ggagcggcttctgttagaacagcccgttcacgcacagccataccttaccaggctccattg
cggagacagatcaaggccaagcctgctggggctcagccctgtggggtgaccagcgctacc
gcccgacgcatcctacagtccctggagcgcatgtccagccccctcgctgatgccaagaga
atcccctctacagtttcctctcccttatcaacatcactggatggcagcactctacacctt
tcacattttcaggccaaaaagaaactgctggactctcccctccccccagtccagaagctg
gtgatcccggcggcagcgtcagtgtcggggaaccgttccatgtccttcaggccctctctg
acccctgggggcctggctcgaacccctagagacacgcccacaagacaatcccctctgatt
cctgaagcagtggcaggtccttctcaaagcacaagcagcattctacccacctaccctctg
tccagcactcctgcattcagcagcacagggtcaggaggtgggaagatgaagagggagagg
accagcacaagaccctcttccaaacgtcctgaagaccagatcgctgagctatcggacctg
ccagccatctcgctcccccacagcccgtccttcagtctgcccagcttcagcttcttccaa
cctcccaccgccacagtcacgcccactgccgctctcactacctcacctgtcctggaggag
accatccgtaacaaggtgccaccgactacagccccctctacccctccctccacacctttc
accttctcctcccccatcgtcatggcaactgctgctagcccaccgtccttctctccgtct
tctggatttaccttcagtgcacctgtagtgaaaacgggtctgtcactatccaacgggaag
atggccaccccagtattggcagcagtgaagcacgctgccagtgagagcatggatgagttt
gaagggccatataaaccagccaaggtgttgaaacagggcagtgttctggacctcctgaat
ggacctggatttgccgttcctgttactcagacctcccctgtccccaaagcccaccaggag
accccagcactgtccaccaacaccccctcccttggggacttgttcaaagcgacaaccggt
tcctgggattgtgacacctgtgtggtgcagaacaaacccactgactctaagtgtgtgacc
tctgtgaccccacgactaaactctggcccctctttagcaaaaaccgacagtatacccttg
ttgtccaggctggagggttccaccaccaccactactcccgctgcaacttttggggccttg
ttcacaaagcctgcaggaagctgggactgtgacacttgtctggttcagaacaagcctgat
gctgtcaaatgtgtggcctgtgagacaaccaagcctgggactggagttaaagcctcactg
actatgcctgccttcttggaggctaagactctgcctgctgctgccccactcctgggcttt
ggagacaagtttaagaagccagagggagcatgggagtgtggcgtgtgcatggtgcagaac
aaggcgcaggacaccaagtgtgtttcctgtgggatcgctaagccaggagcaacggctgcg
cctcattctctaactcccacccctgtcagcgccactcctctactaggctttggggcccag
ttcaagaagccagagggagcgtgggagtgtgatgtgtgctgtgttgagaacaagggagca
gacaaggagtgtgtagcctgccagacccccaagcctggagctaaagtagagcccaaagca
tttggttcctcatcgtttgggatccagtcctcttctgactcggggggattcaagtttggc
atggggacgtcatcggactctggttctgggggcttcaaattcggcggcaccctcttggac
tcctcatcttcagggggcttcaaatttggtgcatctgcctcatctgactctacctcgaca
gacaccagcagctctgcaggtttcaaatttggaggctcctctgagggatgcaaatttgca
gcttcagctgcttctacccctgcagtggacgaggggaagaaggctgaagcccccggtatg
ggtgccgggttcaaattcggcgtcggcggtgggctctcgttcggcactgcagcagctgct
agcacggagagcaaacccccttacagtgggttctcctttcatctggtggcaacctctgat
tcctcctcctctactttcagcctccctgtttctacagagaatgacagtggagcttctaca
gaaaccacgactaccaccaccacagcagcagcgcctatgtttgggaagctggctgaagcc
aaggctactgcgctgaccacaccactagggggcagcatattcagggaatcactagataaa
gacaaggccccttctttcacctttgggaagcacgagaaggaggttgcttctatgggttct
gggttcctattcagtgttcctagtaaagagggggtggcatcagctccatctacaggcttt
tccttcagtaagccagacccacctaaagaccagcccaatgcacctgccttggcctttgag
aagccggaagaccagagtgagaccccagcagcagaatcccctaagccctcattcagcttt
gggcaaagcacaacagatgctgcagccccaaagccagcatttgggttcatggcaagcacc
accaccacctcttcctcaagcagctctacccctgccccagcccccatcccggtccccagt
accttcctgtttgggcagagtgcctctactgaggccaccccagccaagtccttcttgttt
gggcagagccaggacagcctgcctgcccctgcagtctctctgaaccctggcccggctcag
cccttcctgtttgggtctggacctaatgctgctgctccctccttcacttttggagcagcg
gcaccctccactgcagctccatcagcagcccctgctccatttgtattcagccctgcctcc
tccactgggtttgggtcaggacaagctcctaactttggtcagggcacccctcatcccagt
gccccagcgtttggttcccctgccccgtcccccttctctgccactgcctcccagccccct
gccttcggagccaagcccaactctgtccctgtgtttggccaccaagccaactccactcct
gcttttggctcatccgtccccaccacaccaggtggaggtttccagttcggcggagccagt
gtgttcggcacctccagtaacagcacgggggtgtttgctttcggaggggcaccaggaggg
tcccccgccccttctgccacgccctccatcgcaccccaacccagtgcacctggaagtggt
ttcaactttgcagcgccccctacctttaatattggatcaaagagcaccaccttcactgca
gctgccaccggacagcactcaatccctggtcgcaagatcaaaacagccgtccgacgtaag
aagtaa
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