Oncorhynchus keta (chum salmon): 118371864
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Entry
118371864 CDS
T09424
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118371864 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118371864 (smarcc1b)
03036 Chromosome and associated proteins [BR:
oke03036
]
118371864 (smarcc1b)
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118371864 (smarcc1b)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118371864 (smarcc1b)
PBAF complex
118371864 (smarcc1b)
GBAF(ncBAF) complex
118371864 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Omp_AT
DUF919
Motif
Other DBs
NCBI-GeneID:
118371864
NCBI-ProteinID:
XP_035613383
LinkDB
All DBs
Position
20:23271552..23294792
Genome browser
AA seq
979 aa
AA seq
DB search
MATTSGGPNIGTPGTSQSPHTTTAQRKKDGNPSARYWESHDSLVQLETVRQWIGKHYKKY
VQADSPSCQALASLTLQMLQFQEEVFGRRAEIRTHTKLPSQCFLDLRPGGGLCHILGTAY
KFKTDQGWRRFDLQNSSRTDRNVEMFTTLEKTLVQNSCLSRPVVYVDQEVDQNLNSRLAD
IITKHQGSLTEDRTQASHHIYPRPAVTDQDWEWVRPVMRKDNYVLVHWGRHPDSYDSWLS
TSEVEGEVQEPPHTHRPWRVHAGWVLDTEVYNEWMNEEDYLVDDRNVPLILRRRVHVTDQ
QDRKFTPLKKRRRSPSPPSSDGKKKGGKKSGGFKRRGPKEEEEDVEEDLTKDMEDPTPVP
NMEEIILPKNVNPKKDSENTPVKGGMMTDLDEIEDDSLLPGGREDEEGREGLRLSDGEDN
ITEQTHHIIVPSYTAWFNYNCIHQIEKRALPEFFNGQNKSKSPEIYLAYRNFMIDSYRLN
PQEYLSSTSCRRNLTGDVCAVMRVHALLEQWGLVNYQVDAESRPLPMGPPPTPHFNTLAD
TPSGLAPLQHRPLQVSSSQQMLFFPERSVEKPSDSQNFGLRTDLYARKHPKSKGASSGRD
WTEQETLLLLEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSASSLGPLA
YQPVPFSQSENPVMSTVAFLASVVDPRVASAAAKAALEEFCRVREEADKVLEFPALNEAE
KADVMDGEKMETDSGSQQSLQADRQTVLEPSGGERLVEGERVKRENAEMTVTEERDCDSG
GNRESDRGEKEEIAGRWREVEQDEGRRLAELELVDGTVTTAAAAALGAAATKAKHLAAVE
ERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQSFHSEQLK
HAEMKILQQREQQAPYTPQQHTGQSMPSQMMPTGGNSLTMAPRHPGAPNGMYPPPQPDGI
APTQPGPPSTAIHSRGAET
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaacgtcagggggacccaacatcgggactcccgggaccagccagagtccacac
accaccacggcacagcggaaaaaagacgggaatccgtccgcgaggtactgggagagccac
gactccctggttcagctcgagacggtgcgacagtggatcggaaagcactacaaaaagtat
gtgcaggcagattctccatcctgccaggctctagcctccctcacccttcagatgcttcag
ttccaggaggaagtgttcggcagacgggctgaaatccgcacacacaccaaactaccttct
cagtgctttctggacctgcgcccaggaggcgggctttgccacatccttggcactgcatac
aagttcaagactgatcagggctggagaaggtttgacctacagaactcctccaggacggac
cgaaacgtagagatgtttactactctggagaagaccctggtccagaatagctgtctgtcg
aggcctgtcgtgtatgtggaccaggaggtggatcagaacctgaacagcagactggctgac
atcatcaccaaacaccagggttcgttgactgaggacagaacccaagcctctcaccacatc
tacccccgtccagctgtcacagaccaagattgggagtgggtgcgccctgttatgcggaag
gacaactatgtgttggtgcactggggcaggcaccctgacagctacgatagctggctgtcc
accagtgaagtagagggagaggtgcaggaacctccacacacacacagaccttggagggtg
catgcaggctgggtgttggatacggaggtgtataatgagtggatgaatgaagaagactac
ctggtagatgacagaaacgttcctctcatcctccgccggagagtccacgtcacagaccaa
caggaccgtaagtttactccactgaagaagagaagacgctccccctctcctccctcttcc
gatggcaaaaagaaaggaggaaagaagagtggcgggtttaagaggcgtgggccaaaggag
gaagaggaagacgtagaggaggatctgactaaagatatggaggatccaacacctgtccct
aatatggaagaaattatactgcctaagaatgtgaacccaaagaaggacagtgagaacact
cctgtcaaaggagggatgatgaccgacctggatgaaattgaggatgactctctgcttcct
ggtggaagggaggatgaggagggcagagaggggctgcgtctgtcagatggagaagacaac
atcacagaacaaactcaccacatcatcgtcccatcctacaccgcctggttcaactataac
tgtattcaccagatcgagaaacgagctcttccagagttctttaacggacagaacaagtcc
aaatctccagagatatacctggcatatcgtaacttcatgattgactcgtaccggctgaac
ccccaggagtacctcagctccacctcctgcagacggaacctgacaggagacgtctgcgcc
gtcatgagggtccatgcgttgttggagcagtgggggttagtgaactaccaggtggatgca
gaaagcagacctctccctatgggaccccctcccacccctcacttcaacacactggctgat
acaccctcaggacttgccccgctgcagcacagaccactacaggtgtcgtcctcccagcag
atgttgttcttccctgagagaagtgtagagaagccctcagactctcagaactttggcctc
agaacagacctgtatgccaggaaacaccccaagagtaaaggagccagttcagggagggat
tggacagaacaggagaccctcctactgttggaggcgttagaggtctatagagacgactgg
aacaaggtgtcagaacacgtggggtctcgtacccaggacgagtgcatcctccacttcctg
cgcctgccaatagaagacccgtatctggaggactccgcctcctctcttggcccattggcc
taccagcccgttcctttcagccaatcagagaatccggtgatgagcactgtggcgttcttg
gcgtcggtggttgatccccgagttgcctccgccgccgccaaggctgctttggaggagttt
tgtcgtgtgcgtgaggaagctgacaaggttctggagttccctgcactcaatgaggctgag
aaggcagatgtgatggatggtgagaagatggagactgactctggctcccagcagtctctg
caggcggatagacagactgttctagagcccagtggaggagagagattagtggagggagaa
cgagttaagagagagaatgctgaaatgacagtcacagaggagagagactgcgatagcgga
gggaaccgcgagtcagaccgaggggagaaggaggagattgcaggacgatggagggaagta
gagcaggatgaagggaggagactagcagagctggagttggtagatgggaccgttaccacg
gcagcagctgctgctctaggcgccgctgctactaaggccaagcacctagcagcagtagag
gagaggaagatcaagtctctggtggctctgctggtggagactcagatgaagaagctggag
atcaaactgagacactttgaggagctggagaccatcatggaccgagagaaagaggctttg
gagcaacagcgtcagcagctgttgtcagagcgacagagtttccactctgagcagctgaaa
catgcagagatgaagattctacagcagagagagcagcaagcaccatacactccacaacaa
cacacaggccagtccatgcccagccagatgatgcctactgggggaaactctctcaccatg
gccccccgacaccctggagctccaaacggcatgtacccaccaccacagcctgatgggata
gctccgacccagcctggtcctccaagcacagccatacacagccggggagcagaaacatga
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