Oncorhynchus keta (chum salmon): 118371985
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Entry
118371985 CDS
T09424
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03030
DNA replication
oke03410
Base excision repair
oke03420
Nucleotide excision repair
oke03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118371985 (rfc5)
03410 Base excision repair
118371985 (rfc5)
03420 Nucleotide excision repair
118371985 (rfc5)
03430 Mismatch repair
118371985 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oke03032
]
118371985 (rfc5)
03036 Chromosome and associated proteins [BR:
oke03036
]
118371985 (rfc5)
03400 DNA repair and recombination proteins [BR:
oke03400
]
118371985 (rfc5)
DNA replication proteins [BR:
oke03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
118371985 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
118371985 (rfc5)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
118371985 (rfc5)
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
118371985 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
118371985 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_22
AAA_11
AAA_24
RuvB_N
AAA_16
AAA_14
ResIII
AAA_assoc_2
DUF815
AAA_5
DEAD
AAA_7
AAA_2
PhoH
AAA_30
AAA_19
ATPase_2
Thioredoxin_6
TIP49
Mg_chelatase
SLFN-g3_helicase
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
118371985
NCBI-ProteinID:
XP_052335188
LinkDB
All DBs
Position
25:36897910..36906419
Genome browser
AA seq
340 aa
AA seq
DB search
MASIGKIPLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTVLASAKQLYKEKEFNAMVLEVRNNSALICRIIKDKLAYLTHLSFASTRTIFKKGFKL
VILDEADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQ
MIPRLEFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGH
PLRSDIANILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGL
LIKLADIEYRLASGTSEKIQLSSMVAAFQAVRDIVVNEAA
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgattggcaagataccgttgcagtcaagaaatttgccgtgggttgagaaatac
aggccacagaccctagatgacttgatttctcacaaggacatattaagcaccatccagaaa
tttatcagtgaggacaggctgccacatctcttgttctatggacccccaggcacagggaaa
acatctactgttctcgcctctgccaagcagctctacaaggagaaggagttcaacgctatg
gtcctggaggtacgtaataactcagccctgatatgtagaattatcaaagacaaacttgcc
tacctgacccacctgagttttgccagcaccaggaccatattcaagaagggtttcaagttg
gtgatactggatgaggctgatgccatgacccgggatgcccagaatgcattgcggcgagtc
attgagaagtacacagaaaacaccaggttctgtttgatttgtaactacctgtctaagatc
atcccagccctgcagtctcgctgcaccaggttccgcttcgggcccctgtctcaggaccag
atgatacccaggctggagtttgttatccagcaggagagcattgatgtaactccagatgga
atgaaagctattgtgaccctgtcatcaggagacatgagaagatccctcaacatactgcag
agcaccagcatggcgtatgggaaggtcaccgaggataatgtgtacacctgcactggtcac
ccactacgatccgatatcgccaacatcctggactggtcgctaaacaaggacttcacttcc
gcttacaaccagattctccagctgaagacgctgaaaggcctagccctgcatgacatcctg
actgaggtccacctactgatccacagagtggacttccctcctgccattcggatgggcttg
cttatcaagttggcagacattgagtacaggctggcctctggaactagtgagaagatccaa
ttgagttcgatggtggcggctttccaggcagtgagagacatcgtggtcaatgaggccgct
tag
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integrated database retrieval system