KEGG   Oncorhynchus keta (chum salmon): 118371985
Entry
118371985         CDS       T09424                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03030  DNA replication
oke03410  Base excision repair
oke03420  Nucleotide excision repair
oke03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    118371985 (rfc5)
   03410 Base excision repair
    118371985 (rfc5)
   03420 Nucleotide excision repair
    118371985 (rfc5)
   03430 Mismatch repair
    118371985 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oke03032]
    118371985 (rfc5)
   03036 Chromosome and associated proteins [BR:oke03036]
    118371985 (rfc5)
   03400 DNA repair and recombination proteins [BR:oke03400]
    118371985 (rfc5)
DNA replication proteins [BR:oke03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    118371985 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    118371985 (rfc5)
Chromosome and associated proteins [BR:oke03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    118371985 (rfc5)
DNA repair and recombination proteins [BR:oke03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     118371985 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    118371985 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_22 AAA_11 AAA_24 RuvB_N AAA_16 AAA_14 ResIII AAA_assoc_2 DUF815 AAA_5 DEAD AAA_7 AAA_2 PhoH AAA_30 AAA_19 ATPase_2 Thioredoxin_6 TIP49 Mg_chelatase SLFN-g3_helicase DNAX_ATPase_lid
Other DBs
NCBI-GeneID: 118371985
NCBI-ProteinID: XP_052335188
LinkDB
Position
25:36897910..36906419
AA seq 340 aa
MASIGKIPLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTVLASAKQLYKEKEFNAMVLEVRNNSALICRIIKDKLAYLTHLSFASTRTIFKKGFKL
VILDEADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQ
MIPRLEFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGH
PLRSDIANILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGL
LIKLADIEYRLASGTSEKIQLSSMVAAFQAVRDIVVNEAA
NT seq 1023 nt   +upstreamnt  +downstreamnt
atggcatcgattggcaagataccgttgcagtcaagaaatttgccgtgggttgagaaatac
aggccacagaccctagatgacttgatttctcacaaggacatattaagcaccatccagaaa
tttatcagtgaggacaggctgccacatctcttgttctatggacccccaggcacagggaaa
acatctactgttctcgcctctgccaagcagctctacaaggagaaggagttcaacgctatg
gtcctggaggtacgtaataactcagccctgatatgtagaattatcaaagacaaacttgcc
tacctgacccacctgagttttgccagcaccaggaccatattcaagaagggtttcaagttg
gtgatactggatgaggctgatgccatgacccgggatgcccagaatgcattgcggcgagtc
attgagaagtacacagaaaacaccaggttctgtttgatttgtaactacctgtctaagatc
atcccagccctgcagtctcgctgcaccaggttccgcttcgggcccctgtctcaggaccag
atgatacccaggctggagtttgttatccagcaggagagcattgatgtaactccagatgga
atgaaagctattgtgaccctgtcatcaggagacatgagaagatccctcaacatactgcag
agcaccagcatggcgtatgggaaggtcaccgaggataatgtgtacacctgcactggtcac
ccactacgatccgatatcgccaacatcctggactggtcgctaaacaaggacttcacttcc
gcttacaaccagattctccagctgaagacgctgaaaggcctagccctgcatgacatcctg
actgaggtccacctactgatccacagagtggacttccctcctgccattcggatgggcttg
cttatcaagttggcagacattgagtacaggctggcctctggaactagtgagaagatccaa
ttgagttcgatggtggcggctttccaggcagtgagagacatcgtggtcaatgaggccgct
tag

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