Oncorhynchus keta (chum salmon): 118372045
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Entry
118372045 CDS
T09424
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118372045 (chd1)
03036 Chromosome and associated proteins [BR:
oke03036
]
118372045 (chd1)
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
118372045 (chd1)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
118372045 (chd1)
SLIK complex
118372045 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
118372045
NCBI-ProteinID:
XP_052381085
LinkDB
All DBs
Position
9:10768320..10807579
Genome browser
AA seq
1801 aa
AA seq
DB search
MAGRSEDEGVSNSSGESSNSDDESGSGSGSGSSSSSSSSSSSGSGSGSGSDSGSQSDSDS
GKSKEKNEPENKAKIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQSSSNSGSDSSSSE
DSDDDSSGKRRKSGSGSSSGSGSGSGSGSGSDSSAQEQEHSEESDDYEPSHKVKSRKLPT
KANARNGKKSNVQRKKPSAGSSSDDDYDGKKSSSNQGPRRQATQNVSYKEDEEQKTDSDD
LVEVCGEDVPPPDEDEFETLERVMETRIGRRGATGGTTTVYAVEADGDPNANFNPNKEAG
EQQYLFKWKGWSHIHNTWETEETLKLQNVKGMKKLDNFKKKESDKKKWIKCSSPEDVEYF
NCQQELMDDLHSQYQLVERIIGHSNQKSAAGFPDYLCKWQGLSYSECSWEDGALISRKYQ
KSIDDYMRRNQSKTIPSRDCKVLKQRPRFIPMKKQPSYIGGEGLQLRDYQLDSLNWMAHS
WCKGNSCILADEMGLGKTIQTISFLNYQFHEHQLYGPFLLVVPLSTLVSWQREIQLWAPL
MNVVVYLGDISSRGMIRTHEWMHVQNKRLKFNILLTTYEILLKDKGFLGNVPWAFIGVDE
AHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEIFEEEH
GKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNYK
ALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDSEFYNKQEALQHLIRSSGKLVLLDK
LLLRLRERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMRKQALDHFNAEGS
EDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVTK
SSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGTAPSSATPFNKEELSAILKFGAEE
LFKEQEGEEQEPQDMDIDDILKRAETRENDPGPSTVGEELLSQFKVANFSMMEEEEIVMD
SERHHRGWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQVNFNGSESRRSRNRRY
SGSDSDSVSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDA
ELVDKSEHDLKRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGPTFRISGVQVNAKLV
ISHEEELAPLHKAIPADPDERKRYTIPCHSKAAHFDIDWGKEDDSSLLIGIYEYGYGSWE
MIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQRQAGTANWRKR
KPRSKKTKAVKPAKVDEVVKSPSSTPHSDKSSEDEIEEEKEVVPVKLPPRRGRTERVVVK
EEPEPEEEPEPEEEKEKEPKERETKKEVKKEKKEESREVKEKDLKEKKETKPVDPVHEQE
EVTGEKPSEVKTEVREKVKKTSDTPVHITAVGENISEESEELDQKTFSVCKERMRPVKAA
LKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTE
FDARKLHKLYKHAIKKRQENAQAADGITSTVNTHGFKHADMERLKDNSHHDDSSRDSYSS
ERHHSSSRYHEDRDSRDRHTSDPYSRMSGSGGDSRKRPYSAFSNGKDHRDHYRSDRQDSR
YYSDSKHRKVDEHRSGRDGRMDSKERSHSDHRSHSEHHSGSDYSSGHHKSSSRGDSYRYH
ADWQMDQRASASGPRSPRDQRSPRDQRSPYDGRSPLGHRSPFEYSSDHKSTPEQIWSSRK
T
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atggctggaagaagtgaagatgagggtgtgagcaacagcagtggagagtcaagcaactcg
gacgatgagtccgggtcgggctctggatcgggctccagctctagttccagttccagtagc
agctcagggagcggctcaggaagcggctcagactccggcagccagtccgattccgactct
gggaaatccaaggagaagaacgaaccagaaaacaaagccaagatcgatggagccgagttc
tggaagtccaaccccagtatcctagcagttcaaagatcagctatgctcaggaaacagcaa
ctccagcagcagcaacaacagagctcttcaaacagtggatcggattcgtcgagcagtgag
gattcagatgacgactcgagtggaaaaagaagaaaatcgggttctggatcgtcctccggg
tctggatcgggttctggaagtggttccggttctgactcgtcagcacaggaacaggagcac
agtgaagagtcggatgattacgagcccagtcacaaagtcaaaagcagaaagcttccaacc
aaggccaatgccagaaacgggaagaagagcaatgtgcagaggaaaaagccctctgcgggc
tcatcctcggacgacgactacgacggcaagaagtcgtcgtcgaaccaggggcccaggcgc
caggccacgcagaacgtcagctacaaggaggacgaggagcagaagactgactctgacgac
ctggtggaggtgtgcggggaggatgtgcctccgccggacgaggatgagtttgagaccctg
gagcgtgtgatggagacgcggatagggaggagaggagcgactggaggcaccaccacggtg
tacgcagtggaggcggacggagaccccaacgccaacttcaaccccaacaaggaggcgggc
gagcagcagtacctgttcaagtggaaaggctggtcccatatccacaacacctgggagacg
gaggagacgctgaagctgcagaacgtcaagggcatgaagaaactagacaacttcaagaag
aaggaatcggacaagaagaaatggataaaatgttcttcaccagaggatgtggaatacttc
aactgtcaacaggaactcatggacgacttacactcacaatatcagctggtggagaggata
attgggcattcaaatcagaagtcggcggccggttttccggactacctgtgcaagtggcag
ggcctgtcgtactcagagtgcagctgggaggacggagccctcatctccagaaagtaccag
aagagcatagatgactatatgcgcagaaaccagtccaagaccattccctccagagactgc
aaggtgttgaaacagaggccgagatttattcccatgaagaaacagccgtcctatatcggt
ggagaaggactgcagctccgagactaccagttagacagcttgaactggatggctcactca
tggtgcaaggggaacagttgcatcctggcagatgagatgggcctgggaaaaaccatccag
accatctccttcctcaactaccagttccatgaacaccagctgtacggaccgttcctgctg
gtggtacccctgtccacactcgtctcctggcagagagagatccaactgtgggccccgctc
atgaacgtggtggtctacctgggtgacattagcagccggggcatgatcagaacacatgaa
tggatgcacgttcagaacaagagactcaagtttaacatcctgctaacaacatatgaaatt
ctcctaaaagataagggattcctggggaacgtgccatgggccttcatcggcgtggatgag
gcccaccggctgaagaacgacgactcgctcctttataagaccatgatggacttcaagtcc
aaccaccggctgctcatcaccggcacgccactgcagaactcactcaaagagctctggtcc
ctgctgcacttcatcatgcccgaaaagttccactcgtgggagatatttgaggaggaacat
gggaagggtagggactctggctacaccagtctacacaaggagctggagcccttcctgcta
cgtagagtcaagaaggatgtggagaagtctcttcctgctaaagtggagcagatcctcaga
gtggagatgagcgccattcagaaacagtactacaagtggattttgacgaggaactacaag
gccctgagtaaaggtaccaaaggtagcacgtctggcttccttaacatcatgatggagctg
aagaagtgctgcaaccactgctatctcatcaagcccccggaggacagcgagttctacaac
aaacaggaggccttacagcacctaatccggagcagtgggaagctggtgctgctggacaag
ctgctgctgcgtctgcgggagcgtggccaccgtgtgctcatcttctcccagatggtccgg
atgctggacatcctggccgagtacctgaagagccgccagttcctcttccagagattggac
ggctccatcaagggagagatgaggaaacaggcgctggaccatttcaatgctgagggctcc
gaggatttctgcttcttgttgtcaacgcgggcgggcggtctgggcatcaacctggcgtcg
gccgacacggtggtcatctttgactctgactggaacccacagaatgacctgcaggcccag
gccagagcccacaggattggccagaagagacaggtgaacatctaccgcctggtgactaag
agctcggtggaggaggagatcattgagcgagccaagaagaagatggtgctggaccatcta
gtcatccagaggatggacaccacgggcaagacagtcctccacaccggcaccgccccctcc
agtgccactccgttcaacaaggaggagctgtcggccattttgaagtttggtgccgaggag
ctgttcaaggagcaggagggggaggagcaggagcctcaggatatggacatcgacgatatc
ctgaagagagccgagaccagagagaatgaccccggcccctccactgttggagaggagctg
ctctcacagtttaaggtggccaacttctccatgatggaggaggaggagatcgtcatggat
tctgagcgccaccatcggggctgggatgacatcatccctgaggagcagcggcggcggatg
gaggaggaggagaggcagaaagagctggaggagatctacctgctgccccgcatgaggaac
tgtgccaaacaggtcaactttaacggcagtgagagccggcgtagtagaaacagacggtat
tccggctccgacagcgactccgtctcggatcgcaagaggcccaagaaacgaggacggcct
cgaaccattccacgagaaaacatcaagggcttcagcgatgctgagatacgaagatttatc
aagagctacaaaaagtttggtggaccacttgaaagactggatgctattgcccgtgatgcc
gaactagtggacaagtctgaacatgacctgaagcgtctggcggagactgttcacaacggc
tgtctgaagactctcagagagaacccctgtggaccagagaagacgtcaggaggcagaaga
gggaaagtgaaaggccccacgttcaggatctcgggcgtccaggtgaacgccaagctggtg
atctcccacgaggaggagctggcgccgctccacaaagccattcctgccgaccccgatgag
aggaagaggtacacaattccatgccactccaaggcagcacactttgacattgattggggc
aaggaggacgactccagcctgctcataggaatctacgagtatggttacggcagctgggaa
atgattaaaatggaccctgacctcaacctgacacacaagctcctaccagacgaccctgac
aagaagccacaggccaagcaactgcagacgagggcagactatcttatcaaattactgagc
aaggacctggccaaaaaggaagcacagaggcaagcagggacggccaattggcggaagagg
aaaccgaggagtaagaagaccaaagctgtgaaaccagccaaggtggacgaagtggtgaag
agtccgtcctctacgccccactcagacaagtcctcagaggacgagattgaggaggaaaag
gaggtggtcccggtaaagctgccacccagaaggggccgaacggagcgcgtggtggtgaag
gaggagcctgaaccagaggaggagcccgagccagaggaggagaaggagaaggagcccaaa
gaaagggagacgaagaaagaggttaaaaaggagaagaaagaagagagccgcgaggtgaaa
gagaaggacctgaaagagaagaaagaaaccaagcccgtggatccagtacatgaacaggaa
gaggtcacaggggagaagccgagcgaggtgaagactgaggtacgggagaaggtgaagaaa
acttctgacactccggtccacatcacagcagtgggagagaacatctcggaggagtcggag
gaactggaccagaagaccttcagtgtgtgtaaggagaggatgcgaccggtcaaggcggcc
ctgaagcagctggaccgtccggagaagggcctgtcggaacgcgagcagctggagcacacg
cgccagtgcctcatcaagatcggagaccacatcactgagtgtctgaaggagtactccaac
cccgagcagatcaaacagtggagaaaaaacctgtggatatttgtttcaaaatttacagaa
tttgatgcaagaaaattgcataaactgtataagcacgcaatcaagaaaagacaagagaac
gctcaggcagcagatgggatcactagcactgtaaatacccatggttttaaacatgcagac
atggagaggctgaaggacaactctcaccacgacgacagcagcagggacagctacagctct
gaaaggcatcactcgtcgtcgcgctaccatgaggaccgcgacagccgggacaggcacacc
tccgacccctacagcaggatgtcggggagcgggggggactccaggaagagaccctactcg
gccttcagcaacggcaaagaccacagagaccactacaggtcagaccggcaggacagcaga
tactacagcgacagtaagcacaggaaggtggacgagcaccggtcaggccgagacggacgg
atggacagcaaggagcgctcccactcagaccaccgctcccattccgaacaccactcgggc
tccgactactcatcgggccaccacaagtcgtcatcgcgaggtgactcctaccgctaccac
gcagactggcagatggaccaacgggcatcggccagcggtccccgttcgccgcgtgaccaa
cgttcgccacgcgaccagcgctcgccctacgacggacgctcgccattaggccaccggtcg
cccttcgagtactcgtcagaccacaagagcacgccagagcaaatctggagcagccgcaag
acataa
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integrated database retrieval system
