Oncorhynchus keta (chum salmon): 118372155
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Entry
118372155 CDS
T09424
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118372155
09123 Folding, sorting and degradation
03018 RNA degradation
118372155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118372155
03041 Spliceosome [BR:
oke03041
]
118372155
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118372155
mRNA degradation factors
5'-3' decay
Lsm complex
118372155
Spliceosome [BR:
oke03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
118372155
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
118372155
NCBI-ProteinID:
XP_035613840
LinkDB
All DBs
Position
4:26253305..26258681
Genome browser
AA seq
91 aa
AA seq
DB search
MAATPATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccccagctacaaatccatcacagttgctcccacttgagctcgtggacaaa
tgtataggttcccgaatccatatagtcatgaaaaacgacaaagaaattgtcggcacccta
ttgggtttcgatgattttgtcaacatggtgttggaggacgtgacagaatttgaaatcaca
ccggagggaagaaggataaccaaactggaccagatcctacttaacggcaacaacatcacc
atgctcatacctggaggcgaagggcctgaagtatga
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