Oncorhynchus keta (chum salmon): 118372462
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Entry
118372462 CDS
T09424
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118372462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118372462
03036 Chromosome and associated proteins [BR:
oke03036
]
118372462
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118372462
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118372462
PBAF complex
118372462
GBAF(ncBAF) complex
118372462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
118372462
NCBI-ProteinID:
XP_052329502
LinkDB
All DBs
Position
21:23442569..23462530
Genome browser
AA seq
1063 aa
AA seq
DB search
MAVRKKDGGPNVKYFETSDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTRLPMKSFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKRHQQGSVTEDKTCSSHVVV
PIPASLEDEEWVRPVMKRDKQVLLHWGYSPDSYDTWISASEVEAAVEDPPSPEKPRKVHA
KWILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPGDERRDKKPGSAKKRKRS
PSPSPTPTSQEIKKKNTKKGPTTPYTKSKRGQREEEPEDLTKDLDEPSPVPAVEEVTLPK
TANTKKDSELTPVKGGTMTDLDEQEDESMETAEKEEEEGSPSVKGEPVKGSDLHEDNVTE
QTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQE
YLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPS
SLVPLQPKASQTPAAQQILSFPDKVKEKQPVDLQNFGLRTDMYSKKTGPPKSKTAANAMR
DWTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDMSSSLGPL
AYQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRV
EEAARASGRQDPLYGLEGSGIAGTSLEEGDKPEESSEESKSDSQSSEEKRETKENKDGAM
EEDEKQGENGKKEEERGREGEGERDRESEKTETEMGEREKEKEGKEALEEGQREGESEGE
RKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLR
HFEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHNQTGG
PHPSPAPTGPPPQGPSATQSQPAPSIPAPQPAPSPAPSASSVPMTGPSSAQAQPTEPQPT
PSGPHSSPPRPPGHSSTNTTPTLHESSAPGDTLHSSTAAPTPQ
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaacgtaaaatatttcgaaacgtctgatacc
gtctcgcaattcgacaatgtccgcgtttggttgggcaagaattataaaaagtacatccag
gcggagccccccaccaacaagtctctgtccagcctggtggtccagctactgcagtttcag
gaggaggtgttcggacgacatgtcagcaacccacctctcaccaggctgccgatgaagagt
ttcctggactttaagtctggtggggctctctgccacattctggcagcagcctacaagttc
aagagtgatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaat
gtggagatgttcatgactatcgagaaatccctggtacagaataactgtctgagtcgacca
gtgatctacctgagctctgacattgaggccaagctgctggggaaactgaaggacataatc
aagaggcaccagcagggctcagtgactgaagacaagacatgcagctcccatgtggtggtt
cccatccctgccagtcttgaggatgaggagtgggtgcgtccggtgatgaagagagacaag
caggtgctgctccactggggatactctcctgacagctatgacacctggatctcagccagt
gaggtggaggcagctgtggaagatccgcccagcccagagaaacccaggaaggtccatgcc
aagtggatcctggacctggaccagtttaatgagtggatgaatgaggaggactatgaggtc
ggagaggggggccccaagaggaagaggatctcagccaagaccctgacagacgaggtgacc
accccaggggacgagcgccgggacaagaagcccggcagcgccaagaagaggaagcgctcc
ccctccccctcgcccactccaacatcccaggagatcaagaagaagaacaccaagaaaggg
cccaccaccccgtacactaagtctaagcgaggccagagagaggaggagccagaggatctg
actaaagatctggatgaaccatcacctgtacctgctgtagaggaggtcaccctacctaag
acagccaacactaagaaagactctgagttgacaccagtgaaaggaggtaccatgacagac
ctggatgagcaagaggatgaatccatggaaactgcagaaaaggaggaggaggagggctct
ccgagtgtgaaaggagagccagtgaaagggtcggacctccatgaggacaacgtgactgag
cagacccaccacatcataattcccagctacgctgcatggtttgactacaacagtgtccat
gctattgagcgcagagccctcccagagtttttcaatggcaagaacaaatccaaaacccct
gagatttacctggcctacaggaacttcatgattgacacgtacaggctgaacccgcaggag
tacctcacctccaccgcctgtcgtaggaacctggccggagacgtgtgtgccatcatgagg
gtgcatgcattcctggagcagtggggtctgatcaactaccaggtggactcagagagccgg
cccacccccatgggccccccgcccacctcccacttccacgtcctggctgacaccccttcc
agcctggtgcccctgcagcccaaggcatctcagactccggcagcccagcagattctgtca
ttcccagataaggtgaaggaaaagcagccagtcgacctgcagaactttggcctgaggaca
gacatgtacagcaagaagactgggcctcctaagagtaagactgctgccaatgccatgcga
gactggaccgaacaggagacactactgctgctagagggtctggagatgtacaaggatgac
tggaacaaggtgtcagagcacgtgggctcacgtacccaggacgagtgtatcctgcacttc
ctgcgtctgcccattgaggacccatacctggaggacatgtcctcgtccctgggccccctg
gcctaccagcccgtccccttcagccaggcaggcaaccccgtcatgagcaccgtggccttc
ctggcctccgtggtggacccccgcgtggcctccgcagccgccaagtctgccctggaggag
ttttcccgtatgaaggaggaggtcccagcagcactggtggaggcccatgtgaggagggtg
gaggaggcggcgagggccagtggcagacaggaccccctctacggcctggagggcagcggc
atcgcaggcaccagcctggaggaaggagacaaacctgaagagagcagtgaggagagtaag
agtgacagccaatccagtgaggagaagagggagaccaaggagaataaagatggagccatg
gaagaggatgagaagcaaggagaaaacgggaagaaggaggaggagagagggagagaggga
gaaggagagagagaccgagagtctgagaagacagagacagagatgggtgagagagagaag
gagaaggaagggaaggaggctttggaggagggccagagagaaggagagagcgagggcgaa
aggaaggcgaaggtggaacgggatgtgggagaggggaacctggctaccgctgctgcctct
gctctggctgctgctgccgtcaaagccaagcacctggctgcggtggaggagagaaagatc
aagtctctggtggctctgctggtggagactcagatgaagaagctggagatcaaactgaga
cactttgaagagctggagactatcatggaccgagagagggaggctttggagtaccagagg
cagcagctgctggcagaccgtcagtcgttccacatggagcagttgaagtatgcagagatg
agggcgcgtcagcagcacttccaacagatccagcaccagcagcataaccagactggaggc
ccacacccctccccggctcccacgggccccccaccccagggcccctcagccacccagtcc
cagccggcccccagtatccctgcaccacaaccagctcccagcccagcaccctctgcctcc
tccgtccccatgactggcccttcctctgcccaggcccagcccactgagccccagccgacc
cccagtggtcctcactcctcacctccccgcccgccaggccattccagcaccaacaccacc
ccaacactccacgagtccagcgcccctggggatacactccactcctcaactgctgctccc
actccacagtga
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