Oncorhynchus keta (chum salmon): 118372526
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Entry
118372526 CDS
T09424
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118372526 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118372526 (pan3)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118372526 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
118372526 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
118372526
NCBI-ProteinID:
XP_052339679
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Position
28:67285116..67312733
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AA seq
834 aa
AA seq
DB search
MNSGLPASAAPLGGVGIPCVKVKFCRYYAKDKTCFYGDECQFLHEEPSMANMSLHGGGSP
VPLSMSGGAVTAAGYPLSAPPACPVGVPTVTKKSDSLGSAGTALDGQLLTIPGMEGGTDA
NLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTSSSSSSSSPSLLDDGEKNFSHSAHDLFH
GTLAVGPGQSCGSMENSPWTTQSSFPLPLCPLPDPVSSPISSLFSDFGALSISQRRKAPN
PTANEFIPKGVPRMATMVQSSVPAFPMPLFPHPSLSSSTAAALAPGMSLSAGSSPLHSPK
ITPHTSPAPRRRSHTPNPNNPNPANYMVPTSVSDQGAHIIQKETVGGTTYFYTDNTPAPM
AGMVFPTYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQSENTGVP
SEVDSYHSLFPLEPVPPPNRLQKTSNFSYITSCYKAVNSKDDLPYCLRRVHGFRLVNTKC
MMLVDMWKKIQHSNSVTLREVFTTKAFGDHSLVFSYDFHAGAETMFSRHFNDPTADSYFT
KRKWGQHEPPPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPSKILITGKTR
LRVNCVGVFDVLTFDNSQTNHVTLMPQYQQADLISLGKVVLALACNSLAGTQRENLQKAM
ELVSINYSSDLKNLILYLLTEQSRLRSVNDIMPMIGARFYTQLDASQMRNDVIEEDLAKE
VQNGRLFRLLAKLGTINERPEFQKDRTWSETGDRYLLKLFRDHLFHQVTESGTPWIDLSH
IVSCLNKLDAGVPEKINLVSRDEKSVLVVTYSDLKRCFDSTFQELQQAAATGPL
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcttcagctgctccgctcgggggtgtcggaattccctgcgtc
aaggtgaagttctgccgatactacgcaaaggacaagacttgcttttatggggacgagtgt
cagtttttgcacgaggaaccgtccatggcaaacatgtctcttcatggtggaggaagccca
gtccctttatccatgtcaggaggagccgtgacggcagcggggtatccgcttagtgcaccc
ccggcctgcccggtaggggtgccgaccgtcaccaaaaagagcgactctcttggttctgca
ggcacggctctggatggacagctgttaaccatccctggtatggagggtgggactgatgct
aatctgaccaactcctacttcagcagcagctttattggggtgaacggcttcgggagccct
gcagagtctaaatactcaatgatgcagagaatgaccagcagcagcagcagcagcagttct
cccagtctccttgatgatggtgaaaagaactttagccacagcgctcacgatctattccat
ggaaccctggcagttggaccaggtcagagttgtgggtcaatggaaaactctccgtggaca
acacagtcttcattccctctccctctatgtcctcttcctgatccagttagttctcccata
tcctcactcttcagtgactttggtgctctgagcatatcacaaaggagaaaggctcccaac
cctacagccaatgagttcatccctaagggggttccccgcatggccactatggtccagtcc
agtgttccagccttccccatgcccctattcccccaccccagcctcagcagctccaccgcc
gctgccctagcacccgggatgtctctttctgcagggtcctcccccctccactcccccaaa
atcaccccccacacctcccctgccccacgccggcgcagccacacccccaaccccaacaac
cccaatccggctaactacatggtgcccaccagtgtgtctgaccagggggcccacatcatc
cagaaggagacggtgggggggaccacctacttctacaccgacaacacccccgctcccatg
gccgggatggtgtttcctacctaccacatctacccccccactgctccccacgtggcctac
atgcagcccaaagccaacgctccgtccttcttcatggctgatgaactccgacaggagctg
ataaacagacatctaatcaccatggctcagatcgaccagtcagagaacaccggtgttccc
tctgaggtggatagctaccacagcctgtttcccctggagcctgtcccccctcccaaccgc
ctgcagaagaccagcaacttcagctacatcacttcctgctacaaggccgtcaacagcaag
gacgacctgccttactgcctgaggagggtacatggtttcaggctggtgaacaccaagtgt
atgatgctggtggacatgtggaagaagattcagcactccaactctgttaccctgagggag
gtcttcaccaccaaggcctttggagaccactcgttggtgttttcctatgacttccatgcg
ggggcagagaccatgtttagcaggcacttcaacgaccccactgccgactcctacttcacc
aagaggaagtggggacagcacgagcccccaccaccccggcagcatgctggtctgcttcct
gagtctctgatctgggcctacatcgtccagctgagctcagctctcagaaccatccacact
gctggcctggcctgcagggtcatggaccccagcaagatcctcatcaccggcaagaccagg
ttacgggtgaactgtgtaggggtgtttgatgtcttaacgtttgacaacagtcagaccaac
catgtgaccctcatgccacagtaccagcaagcggacctgatatccctgggcaaggtggtg
ttggccctggcctgtaactctctggctggcactcagagagagaacctgcagaaggccatg
gagttggtgtcaatcaactactcatcagacctcaagaacctcatcctgtatctgctgaca
gagcagtcaaggctgcgaagcgtcaatgacatcatgcctatgatcggagctcgcttctac
acacagctggacgcatcacagatgaggaatgatgtcatcgaggaggaccttgccaaggag
gtccagaatggtcgtctcttccgtctgttggctaaactgggcaccatcaacgagaggcca
gagtttcagaaggaccgtacgtggtctgagacgggggaccggtacctgctgaaactgttc
agagaccacctgttccaccaggtgactgagtctgggaccccctggatagacctcagccac
attgtctcctgcctcaacaaactggacgcgggcgtgcctgagaagataaacctggtatct
cgtgatgagaagagtgttctggtggtgacctactcagacctgaagcgctgcttcgacagt
accttccaggagttgcagcaagcggctgccactggccccctgtag
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