Oncorhynchus keta (chum salmon): 118373062
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Entry
118373062 CDS
T09424
Name
(RefSeq) exosome complex component RRP4-like
KO
K03679
exosome complex component RRP4
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118373062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118373062
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
118373062
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
118373062
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
118373062
NCBI-ProteinID:
XP_035615018
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Position
13:26676596..26680323
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AA seq
295 aa
AA seq
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MAADMRLPTIRKQVSLSSSLSALDGKDLVVPGDVITSDTGFMRGHGTYMDEEKLTASVAG
EVERVNKLICVRPLKTRFNGEVGDVVVGRVTEVQQKRWKVDTNSRLDSVLLLSSVNLPGG
ELRRRSAEDELTMRDYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSL
IKRQKTHFHNLPCGASIILGNNGFVWLYPTPGHQDEEAGGYYTSLEPVSLSDREVISRLR
NCLLALGAHKVLLYDTSVLYCYESSLPHQIKDILKPEVMEEIVMMTRQKLVELEG
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggatatgagattgccaactattcggaaacaagtatcgttatcatcctctctg
tctgctttggatggaaaagatctagttgttcccggtgatgtgatcacatcagatacaggg
tttatgaggggtcatgggacttatatggatgaagaaaaactaacagcctctgtggcagga
gaggtggaaagagtgaacaagctcatctgtgtacggccgctcaagaccaggttcaacggg
gaggttggagatgtggtggttgggagggtcacagaggtgcagcagaagcgctggaaggtg
gacaccaactccagactggactctgtgttgctgctgtcctctgtcaatctgcccggagga
gagctgaggagacggtcagcagaagatgagctcaccatgagagactaccttcaggagggg
gacctcatcagtgcagaggtacagtctgttttctcagatggggcgctctctcttcacacc
cgcagtttaaagtatggaaagttggggcaaggagttcttgtgcagctatctccctctttg
atcaagagacagaaaacccacttccacaacctgccttgtggggcctccatcatcctgggc
aataatggctttgtgtggctgtaccccaccccaggacatcaggacgaggaggctggagga
tactacaccagtctggagcctgtctctctctcagatcgggaggtgatctcacggttgagg
aactgcttgctggccttgggggcacacaaggtgcttctgtacgacaccagtgtgctctac
tgttacgagtcatcactcccacaccagatcaaggatatcttaaaaccagaggtgatggag
gagattgtgatgatgacgcgtcagaaacttgtcgaactggagggttag
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