Oncorhynchus keta (chum salmon): 118373071
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Entry
118373071 CDS
T09424
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118373071
Transcription factors [BR:
oke03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118373071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
DUF2408
MoCoBD_1
Motif
Other DBs
NCBI-GeneID:
118373071
NCBI-ProteinID:
XP_052318524
EnsemblRapid:
ENSOKEG00005040446
LinkDB
All DBs
Position
14:74717491..74944592
Genome browser
AA seq
838 aa
AA seq
DB search
MPSSAEVVSLGSGGRGPVAEGAIGGDERLSFRIMSSKQATSPFVSVADGEEAMSQDHLSW
DKEESAEAHGAPQLPLHSLLHSKGSMDELQPLSSVPPESDWDSMVSAQQRMESDSNKVCS
LYSFRNNSTSPHKPEEGARERGDLLSGSAFGTPERRKGSLADVVDTLKQKKLEEMTKSEQ
DESSCMETLLSKDWKEKMERLDTGDLLGEVKGTPESLVEKEHQLSTMITQLISLREQLLA
AHDEQKKLAASQMEKQRQQMELARQQQEQYYEEGCSMIARQQQQLLQQQHKINILQQQIQ
VQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGISYKPGDNYPVQFIPSTMAAAAASG
LSPIQLQQLYAAQLASMQVSPGAKMPPLPQPPNNSGPISPSGLKNDKRSSSPITQVKEEG
TQPLNLSARPKTAELVKSPTSPTHSLFTGSKTSPNSLSKSGIPSPLGGMGRGSSLDILSS
LNSTALFGDQDAVMKAIQEARKMREQIQREQLQHHQQGMEAKLSALTGMGLNNCSRADKS
WFTEYIERAHFESLGHHLSKLGEDGKIGHRVIDLTRPEDLDGWKALNGSGTGADKPQQYY
CWPTGGASTAEARVYREARGRNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISK
ILGSRWKSMTNQEKQPFYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQM
MRSRRQEMRQFFTVGQQPQIPISTSAGVVYPGAITMATTTPSPHMTSECSSASASPEPAI
PVIQSTYNMKIEPSAMLTNVPIINGEVDEMDMYEDFDEEPKSDYSSETETLEPIVSAN
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgccatccagcgctgaagttgtctctcttggatcgggaggaagagggccagtggcggag
ggggccatcggtggagatgagcggctcagtttcagaataatgtcttccaagcaagccacc
tctccgtttgtctccgtcgccgatggggaggaagccatgagtcaggaccacctgtcctgg
gataaggaggagagtgccgaggcccacggggcgccccagctgcccctgcacagcctgctc
cacagcaagggctccatggacgaactgcagcccctcagcagtgtccctccagagagtgac
tgggacagcatggtgtcagcccagcagcgcatggaatctgacagcaataaagtatgttcc
ctgtactccttccggaataactcaacctccccacacaagcctgaggagggggcccgggag
cgcggcgacctgctgagcggatctgcgttcggaactccggagcgccgcaaaggaagcctg
gccgatgtggtggacacactgaagcagaagaagctggaggagatgacaaagtcagagcaa
gatgaatccagttgcatggaaacacttctgtcaaaagactggaaagagaagatggaaagg
ctcgacaccggtgatcttctgggagaagttaaaggtactccagagagcctggtagagaag
gagcaccagctgagcaccatgatcactcaactgatcagcctgagagagcagctcctggcc
gctcacgatgagcagaagaagctggccgcctcacagatggagaaacagagacagcaaatg
gagctggcccgccagcaacaggaacagtattatgaagaagggtgttccatgattgccaga
caacagcagcagcttctgcagcagcagcacaaaatcaatatcctccagcagcagattcag
gtccagggtcacatgcctccgctcatgatccctatttttccacacgaccagcgcaccctg
gcagcagccgccgcagcccagcagggctttctcttcccaccgggaatctcttacaagcca
ggtgacaactacccggtgcagttcattccatccacaatggcagctgcggcagcgtcagga
ctcagccccatccagcttcagcaactgtatgccgcccagcttgccagcatgcaggtctct
cctggagccaagatgccgccactcccccagcctcccaacaacagcgggcccatctccccc
tccggcctgaagaacgacaagagatcctccagccctatcactcaagtcaaggaggaggga
acgcagcctctcaacctgtcagcccggcccaagacggcagagctggtcaagtcccccacg
tcccccacacacagcctgttcacaggcagcaagaccagccccaacagcctgtccaagagc
ggcatccccagtcccctcggaggcatgggccgtgggtcttctctggacatcctgtccagc
ctgaactccacagcgctgttcggggaccaggatgcggtgatgaaggccatccaggaggcc
aggaagatgagagaacagatccagagagagcagctgcagcaccaccagcagggcatggag
gccaagctctctgccctcacaggcatgggcctcaacaactgcagcagggctgacaagagc
tggttcactgagtacattgagcgggcacactttgagagccttggtcaccatcttagcaaa
ctgggagaggatggcaaaattggccacagagtcatcgacctcaccaggccagaggatctg
gatgggtggaaagctctgaatggctctggtaccggagcagataaaccacaacagtattat
tgttggcctacaggaggtgccagcacagccgaggcacgggtctacagagaagcccggggg
aggaacagcaacgagccccacattaagagacccatgaacgccttcatggtgtgggccaaa
gatgagcgccgcaagatcctccaagccttcccagacatgcacaactccaacatcagcaag
atcctgggctctcgctggaagtctatgaccaaccaggagaagcagccgttctatgaggaa
caggcccgtctcagtaagatccacctggagaagtaccccaactacaagtacaagccccgg
cccaagaggacctgcatcatcgacgggaagaagctccgcatcggcgagtacaagcagatg
atgcgctcgcgacggcaagagatgaggcagttcttcactgtggggcaacaaccgcagatc
cccatcagcaccagcgccggcgtggtctaccctggggccataaccatggcaacgaccaca
ccctcccctcacatgacgtcggagtgctccagcgcctcagcaagcccggagccggccatt
cccgtcatccagagcacctacaacatgaagatagagcccagtgccatgttaaccaacgtc
cccatcatcaacggagaggtagatgagatggacatgtacgaggactttgacgaggagccc
aaatcggactacagcagtgagactgagacactggagcccatcgtcagcgccaactga
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