Oncorhynchus keta (chum salmon): 118373206
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Entry
118373206 CDS
T09424
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1 isoform X2
KO
K24318
scavenger receptor class F member 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118373206 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118373206 (scarf1)
Membrane trafficking [BR:
oke04131
]
Endocytosis
Phagocytosis
Scavenger receptors
118373206 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
118373206
NCBI-ProteinID:
XP_035615217
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All DBs
Position
1:complement(31172546..31182400)
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AA seq
962 aa
AA seq
DB search
MGLFLTGLGLLLCCSLSSPQRLAPSERNVCQDLRDPSTLVCCTGWRQQGEECTIPVCDGE
QACQQDEVCVYPGVCRCRPGYYGAHCKTRCPPEFWAPDCREMCKCHPHGRCDPITGECTC
LPNRWGPLCQNACRCGRHGHCHPVHGNCTCDEGWWTPTCTKQCQCYPGTSTCDPLTGRCQ
CASGYWGQKCSLRCSCYKSSCQQKTGVCECQNGWWGPSCDRRCNCDLNHSECRAVSGECL
CQPGYKGAVCNEPCGPGEYGSGCTLSCGHCKRGQSCSVVDGVCTACEPGWNGTRCDQPCK
RGYHGNDCHEACPRCRNGEPCNPRTGACSRCDPGWTGPRCGKPCFNRTFGDACRFLCSPC
FHGHCDHVTGSCVCEPGFQGQSCNITCPDQLYGFNCSSACDCGEGTACHPETGACPYSGH
RALIAGLLVPLFLVLLGLVCCCCCCGGPTDSKDRVAVGDGGTSVRMKYHVYNVLANVSSA
VPCISVWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTDGSSFDSDEETGEALYCVPPR
EDIPAVAGGEFQEFQHEMSSKCNMFPDPSAFSVSAEDMSLPFGIPRTSSNAKSKRPSVSF
AEGTRFSPKERRGSAQDLTPGAPRTKPKSPWGVLMLSALQAHGGKASEGEEMETGEGGVD
GCGGGTGPLEEPGSSGEAGDPDVDRYTATPSQAMSTLQVPGALVGRRRTISNAAVNRKGG
QAPGSTSKGQQAEIDKGMDKVTTVYVTVGKAGVGRPLSKLELPSSEGPVQAMLRRLGSLQ
RHKDQEGGTRSKGKIPGAEGITKPPRRKLGARASVWEQGGHPPLGVEGPVGEGVPMRKPS
RRKQHAHHSSPAVMGNTDDGTNTHTPLEGANATIMPTRPLSSILKSVPEVAGLEVMGERS
AVRGENGDPGMQTETDSGYLTVGPAGIVTNAVSLSEVIANDGVVASVDDGANLYENVMIM
HS
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgtttctgacgggtctaggattactgctctgctgttccctctcctcccctcag
agactggctccctcagagagaaatgtctgccaggacctcagggatccctccactcttgtc
tgttgtactggatggaggcaacagggagaggagtgtactatacctgtgtgtgatggtgag
caggcctgccagcaggatgaggtgtgtgtatacccgggcgtctgtcgctgtcgccctggc
tactatggagcccactgcaagacacgctgccctccagagttctgggcaccggactgccgt
gagatgtgcaagtgccaccctcacgggcgctgtgacccgatcacgggcgagtgcacatgc
ctccccaaccgctgggggccactctgccagaacgcctgcagatgtggccgccacgggcac
tgtcaccctgtgcacggcaactgcacctgcgatgagggctggtggacgcccacctgtacc
aagcagtgccagtgctacccaggcacctccacctgcgacccactgaccggcaggtgtcag
tgtgcctcagggtactggggtcagaagtgcagccttcgctgtagctgctacaaatcgtcg
tgccaacagaagacgggggtgtgcgagtgccagaacgggtggtggggtccgtcgtgtgat
cgccgctgtaactgtgacctgaatcacagtgagtgtcgtgccgtcagcggggagtgttta
tgtcagcctgggtacaagggagccgtctgtaatgagccatgtggacctggggagtatggc
agcgggtgtacactgagctgtggccactgtaaacgaggccagtcgtgctctgtggttgac
ggtgtctgtacggcctgtgagcctgggtggaacggcacacgctgtgaccagccgtgcaag
cggggttaccatggaaacgactgccatgaggcctgcccacgctgcaggaacggtgaacca
tgcaaccccaggacgggggcctgttcacgatgtgatccaggatggaccggacccagatgt
ggcaagccatgctttaacagaacattcggggacgcctgccgcttcctgtgcagcccctgt
ttccatggccactgtgatcacgtgacaggaagttgtgtctgtgagcccgggttccaggga
cagagttgtaatatcacctgtccagaccagctgtatggctttaactgttcctctgcctgt
gactgtggagagggcaccgcctgtcacccagaaacgggggcgtgtccatacagtggtcac
agggctctgatcgctggtctcctggtccctctgttcttggtgctgctgggtctggtctgc
tgctgctgctgctgtggaggacctactgacagcaaagacagggtagcagtgggtgatggt
ggtacctctgtccgtatgaagtatcatgtgtataatgtcctggccaacgtgagctctgct
gtaccctgtatctctgtctggtcctctgggctacccagagtcacagtgtcccaccacgac
cctgagctgacattcaaccacagtttcatagagcctccctcctcaggctgggtgacggac
ggatcctccttcgacagtgatgaggagaccggagaggctctctactgtgtcccccccaga
gaagacatccctgcagtggcgggcggtgagttccaggagttccagcatgagatgagttct
aagtgtaacatgttccccgacccctctgccttcagcgttagtgcagaagacatgtccctc
ccctttggcatcccccgcacctccagcaacgccaagtccaaacgcccctccgtctccttc
gccgaaggcaccaggttcagccccaaggagcgccgaggctctgcccaggacctgactccc
ggggccccccgcaccaaacctaagtccccctggggggtgctgatgctgtcagccctccag
gcccatggagggaaggcctcagagggggaagagatggagacaggtgaggggggtgtggat
ggatgtggaggtgggactggaccattggaagaaccaggatccagtggtgaagcaggggac
cccgatgtggacaggtacacggccaccccgtcccaagccatgtctacactgcaggtgccg
ggagcattggtaggaagaagacgcaccatatccaacgctgctgttaacagaaagggtggg
caagcaccagggtccacatctaagggccagcaggcagagatcgataaagggatggacaag
gtgaccacagtgtacgtgacagtgggtaaggcgggggtggggaggcccctgtctaaacta
gagctccccagctcggagggcccggtacaggccatgctacgcaggctaggcagcctccag
agacataaagaccaggaggggggaactaggtccaagggtaagatcccgggggcggagggg
atcacgaagccacccaggaggaagctaggggccagggccagtgtgtgggagcaggggggt
cacccacccttgggggtggagggtcctgtaggggaaggtgtacctatgaggaaacccagt
aggaggaaacagcacgcccaccacagctcgcctgctgtcatgggaaacactgacgatggc
actaacactcacaccccactagagggtgccaatgccaccattatgcctacgaggcccctg
tcctccattttgaaaagtgtgccagaggtcgctgggttagaagtcatgggtgaaaggtca
gcggtgaggggagagaatggtgaccctgggatgcaaactgagactgacagtggatatcta
acagtcgggccagctggaattgtaaccaacgctgttagtctgagtgaagtcatcgccaat
gacggagtggtggccagtgtggacgatggagctaacctatatgagaatgtgatgataatg
cattcctaa
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