Oncorhynchus keta (chum salmon): 118373682
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Entry
118373682 CDS
T09424
Name
(RefSeq) ATP-dependent RNA helicase DDX19A-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118373682
03015 mRNA surveillance pathway
118373682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118373682
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118373682
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118373682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF1028
HNF-1_N
New_glue
Motif
Other DBs
NCBI-GeneID:
118373682
NCBI-ProteinID:
XP_035615774
LinkDB
All DBs
Position
10:complement(10540426..10551597)
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AA seq
503 aa
AA seq
DB search
MSTDSWAQAVDEQEAAAESIGSLQIKDKPEENGTASAALETTTTTTTTTTNTAAASATTP
AKTGGGEGDKTGEEDDKDDKAAQSLLNKLIRSNLVNTTNQVEVLQRDPNSPLYSVKSFEE
LRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSHV
DPNNKFPQALCVSPTYELALQTGKVIEQMGKHYSEVKLVYAIRGNKLQRGTQLQEQVVIG
TPGTMLDWCLKFKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKQCQMLLFSAT
FEETVWNFAQRIVPDPNIIKLKREEETLDTIKQYYVLCNSKEEKFMALCNIYGAITIAQA
MIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAVIDRFRDGKEKVLVTTNVCARG
IDVEQVSVVINFDLPVDRDGNPDNETYLHRIGRTGRFGKRGLAINMVDSRFSMNVLNKIQ
DHFNKKIEKLDTDDLDEIEKIAG
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccgactcctgggcccaggctgtggacgagcaagaagccgcggcggaatcgatt
ggtagcctacaaatcaaagacaagcccgaggaaaatggtactgccagcgctgcattggag
acgacaacaacaacaacaacaacgacgacaaacacagcagccgccagcgctacaacgcct
gcaaagaccggaggaggagagggagacaaaacaggggaggaggatgataaagatgacaag
gcggcacagtcgttattgaataagttgatacgcagtaatctagtgaacacaaccaatcaa
gtagaagttctacagagggatcccaactctccactttactctgtcaaatccttcgaggaa
ctacggcttaaacctcagctgctccagggagtgtacgccatgggcttcaaccgaccctcc
aaaatccaagagaacgcattacccatgatgctcgctgaacccccacagaacctgatagcc
cagtctcagtcagggacagggaagactgctgcctttgtcctggccatgctcagtcatgtt
gatcccaacaacaagttcccacaggctctttgtgtgtctcctacctatgagctggccctg
cagacaggaaaggtcattgagcagatggggaagcactactcagaggtcaaactagtttac
gccatcagaggaaacaaactgcagagaggtacccagctccaggagcaggttgtgataggg
acgccaggcaccatgctggactggtgtctgaagttcaagttcatcgaccccaagaagatc
aaagtgtttgtcctggacgaagctgacgtcatgatcgctacacagggtcatcaggaccag
agtatacgcattcagaggatgctacccaaacagtgccagatgctgctgttctctgccacg
tttgaggagacggtgtggaactttgcccagcgcatcgtcccagaccccaacatcatcaag
ctgaaacgggaggaggagacgctggacaccatcaagcagtactacgtcctctgtaacagc
aaagaggagaagttcatggccctctgcaacatctacggagccatcaccatcgctcaggcc
atgatcttctgtcataccaggaaaacggcggggtggttggcaggtgagctgtcccgggag
ggccaccaggtggcgctgctcagtggggagatgcaggtggagcagagagctgctgtcatc
gaccgcttccgagacggaaaggagaaggtcctggtcaccaccaacgtctgtgccagaggt
attgacgtggagcaggtttccgtggtgataaactttgacctgccagtggacagagacggt
aacccggacaacgagacgtacctgcatcggattggccgcacgggtcgttttgggaagcgg
ggattggccatcaacatggtggacagcaggttcagcatgaacgtcctaaacaagatccag
gatcacttcaataagaagatcgagaagctggacactgacgatctggatgagatagagaaa
atcgccggctga
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