Oncorhynchus keta (chum salmon): 118374000
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Entry
118374000 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site) endonuclease
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118374000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oke03400
]
118374000
Enzymes [BR:
oke01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
118374000
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
118374000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
118374000
NCBI-ProteinID:
XP_035616232
LinkDB
All DBs
Position
Unknown
AA seq
312 aa
AA seq
DB search
MSKRAKKNEQEAGDGDHDNGTAPAAKKGKKVKEPEAPILYSDPPDKMNSKDGRAANMKIT
SWNVDGLRAWVKKKGLDWVRGEAPDVLCPCRRQCAXKSLPDEITSMPKFPHKYWAGSDEK
EGYSGVAMLCKTEPLKVTYGIGKEEHDKEGRVITAEFPTFFLVTAYVPNSGRGLVRLDYR
KTWDVEFKAYLSDLDKRKPLVLCGDLNVAHEEIDLKNSKGNKKNAGFTAEEREGFNQLLA
AGFTDSFRELYPEQANAYTFWTYMMNSRSKNVGWRLDYXVLSSALLPGLCDSKIRNKAMG
SDHCPITLHMVV
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagagcgaagaaaaatgagcaggaggctggagatggtgaccatgacaacggc
acagctcccgctgccaagaaaggaaagaaggtcaaggaaccagaggcccccattctgtac
agtgaccctcctgataagatgaacagcaaagatggtcgtgctgctaacatgaagatcacc
tcctggaatgtggatgggctcagagcttgggtcaagaagaagggccttgattgggtgcgt
ggcgaggccccagatgtgctgtgcccctgcaggaggcagtgcgctngaaagtcccttcct
gatgaaatcacctccatgcccaagttcccccacaagtactgggctggctccgatgagaag
gagggctatagcggggtagctatgctgtgcaagactgagcccctcaaagttacctatggc
ataggtaaagaggagcatgataaggagggccgtgttatcactgctgagttccccaccttc
ttcctggtcaccgcctacgtgcccaactctggccgaggcctggtgcgcctggactatcgc
aagacttgggacgtggagttcaaggcctacctgagcgacctggacaagcggaagcccctg
gtgctgtgtggcgatctgaacgtggcccatgaggagatcgacctgaagaactccaaaggc
aataaaaaaaacgcaggcttcacagcagaggagcgtgagggcttcaatcagctgctggct
gcaggcttcaccgacagcttccgcgagctgtaccccgagcaggccaacgcgtacaccttc
tggacctacatgatgaactctcgctctaagaacgtaggctggcgtctggactacnntgtg
ctgtcctctgctctactgccaggtctttgtgatagcaagatccgcaacaaagctatgggc
agtgaccactgccccatcactctacacatggttgtgtag
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