Oncorhynchus keta (chum salmon): 118374012
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Entry
118374012 CDS
T09424
Symbol
ercc1
Name
(RefSeq) DNA excision repair protein ERCC-1
KO
K10849
DNA excision repair protein ERCC-1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03420
Nucleotide excision repair
oke03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
118374012 (ercc1)
03460 Fanconi anemia pathway
118374012 (ercc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oke03400
]
118374012 (ercc1)
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
118374012 (ercc1)
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Gene cluster
GFIT
Motif
Pfam:
Rad10
HHH_5
HHH
HHH_2
Motif
Other DBs
NCBI-GeneID:
118374012
NCBI-ProteinID:
XP_052379017
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Position
7:48168086..48180744
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AA seq
386 aa
AA seq
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MEKKRFNINLDDSAFTKERAPVKPLFQPSSKAGQSASSSSSSSSSSSTTSETKAQPAPPS
SAGQPLSYAEFIVQSKGHAPQRVPSAPQRVELSRAAAGTGTGIDTDTGSLKQGPSQGAQG
GPDVTSSSSSVGCERPRAQGTKDPGSGGEGEEGQRAGTEQKQGEGQGSEGSNILSHPKPV
GSGNSIIVSPRQRGNPILKFVRSVPWEFGEVVPDYVLGQTTCALFLSLRYHNLNPNYIHD
RLKLLGQTFTLRVLLVLVDVKDPHHSLKELARICIMADCTLILAWSPEEAGRYLETYKSY
EKKPADLLKEHVEKDYLSKVTDCLTTVKSVNKTDSITLLSTFSSLEGIITATKEDLVLCP
GLGPQKARRLYDVLHQPFLKAKKKDS
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaagaggtttaatatcaacctagacgactctgccttcacaaaagaaagagcc
ccggtgaaacccctattccagccctcctctaaggcaggccagagtgcatcatcatcatca
tcatcatcatcatcatcatcaaccacctctgagaccaaagctcagcctgcacccccgtcg
tctgctggccaaccactatcctacgcagagttcattgtccagagcaaaggccatgcacct
cagcgagtcccctcagctccacagagagtggagctgtccagggctgctgcaggaacgggg
acagggatagatacagacactggtagtttgaagcagggtcccagtcaaggagcacaaggt
gggcctgatgtgacgtcgtcgtcgtcctctgtggggtgtgagaggcctcgggcccagggg
acaaaggatccggggtctggtggagagggagaggaggggcagagggctgggactgagcag
aagcagggggagggtcaagggtcagagggcagcaacatcctaagtcatcctaaaccagtg
gggtctggtaatagtatcatagtcagccccagacagagaggaaaccccattctgaaattt
gtgaggagtgtgccttgggagtttggagaggtggtccccgactatgtcctgggacagacg
acctgcgctctcttcctcagtctgaggtaccacaacctcaaccccaactacattcacgac
cgtctcaaactgttgggccagaccttcaccctcagggttctactggtgttagttgatgtg
aaagaccctcaccattctctgaaagagctggctcgtatctgcatcatggctgactgcact
ctcatcctggcctggagtccagaggaggcggggcgttacctggagacgtacaagtcctat
gagaagaaaccagctgatctgctgaaggaacatgtggagaaagactacctgtcgaaggtg
acggactgtctgaccactgtgaagtctgtcaacaagactgactcgatcactctgctgtca
accttctcttccttagaggggatcatcactgcaactaaagaggacctggttctctgtcct
ggactgggaccccagaaggccagacgtctctatgacgtgctacaccagcccttcctcaag
gccaagaagaaagacagctga
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