Oncorhynchus keta (chum salmon): 118374362 Help Entry 118374362         CDS       T09424                                  Symbol setx Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism oke  Oncorhynchus keta (chum salmon) Brite KEGG Orthology (KO) [BR:oke00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:oke03021]     118374362 (setx) Enzymes [BR:oke01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      118374362 (setx)     5.6.2.5  RNA 5'-3' helicase      118374362 (setx) Transcription machinery [BR:oke03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      118374362 (setx) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 SEN1_N AAA_19 AAA_30 Viral_helicase1 UvrD-helicase AAA_22 ResIII UvrD_C_2 AAA_16 AAA_7 Motif Other DBs NCBI-GeneID:  118374362 NCBI-ProteinID:  XP_052381347 LinkDB All DBs Position 9:complement(17141940..17206580) Genome browser AA seq 2454 aa AA seqDB search MMSMCRWCTSLGDDVAKLLQRYWDLSWLAEDEEAVNEKVALNDDLDKCLECVVAYHRAKE ELPGLHRSLWELETSRLLDLFSHAAKDAQPAKDLSYVEEDGREIGVSNISPAVYEDRLGV PLSEVLKYPYLLASPELSEMCVEAICKMEEYNSFRVCSKDPGIYLLLVHPNETVRRWAIG AARSLGKVDRDDFYDLQDIFTCMFYIVELRIPQNFPDMDTSYDPTTKMTLLQPHLYDSKN AKNYWLGICMLLTQLDAQAMDSLFLGPDKQANILLCILNALKDEEPSNEMDPFWPVLQCF MVILDCLGSRFWGQIEPSQAFQAITQSPSYSGELESIRQQTMISRVKTETTYDDDMVTCS QMVYDSNTKVTKGSRRSRGVDSNVVYEDMSSLVNLLHSDVGQALRVHDSTFLWFIPFVKS VMDLDEHSVLYITEVVHYLCGEISTDLPKPQVRICDKVTEFFTLILVHIIELHLGSGRMN MLYYCAPKWVGVLVKCATLPGDAFVHTSECPVSHSVSSTSSLRVSVPRKASTSRAVPQAC MHIIRSLLKEGTRLNPNSKCHHFLNLLNKHLRDGQQREWKLIRPEIQELQICLKDYVKMM MNRPNISTSPPEPLDIEAGPVAPTTLPLQSSNDPSGPSSLAEFNPPIKQEGLWDDVEGST SGGGDFSGVQRGWDINIALVKKEPLMPEEEFLEPTNDSRPTQDNLTSLRADPEKIQVIKS RLGQLMTKKSKSERARPSVGLSEFGKEKPENLLTSRREEASNLQGISRHPPCLQESIDNV PLSVLKSNLKAKKGSKSSRDRSKGNSRQFDRPQSPPKSTSDVIVISDDEATLDVGRARRP ECLSENYQIKNEPDASDKNRSPWRDYDGDMSESQVFEFETQEDMVSAWSKRDSESNMPPE KPKDDSPVSPTSREPLSSWECDTQPIYDEDIERACQQVEKELEKPKTPPQGLKRAIVVKK RNILVDAKPLASKCLSKKPTVVEKRFKEPVKDAPHAVTPPLRKSSSTVRSNRLETETHSS LTTSAISHKTSLTPAIVPPKKVRKAIEPVSTAEKLGLKKKVRKAFDLSQGSRDSVGDLRH HGATVNVPQAKKLTRQTKRSKVTFPQKRVVKGSNNKLFQFFRQSKQALGAGISEKAEPMK RNPKKIDEIQTPSFATEEDDEDEDLQCSQQDPARHEEQLTFNRSSQRANEDKPASSNTVS SVLSNMDRQISPYFQRNDVTPGPSGQVPNSNEGEDDDEDWMHLTQMEPTEMEMCTQLEEE EDFFYTQRDPVDMDIDADSQRPFEDKGGSSDLTWFKQADEGQEAPLATQTFKKPATPPPS RSNLTQDDERLFLKPGMSPMSVKKAKPSTTKIYATSSSRSASLVQEMERTANAPFSASSA PAGRGRPARPVVPARPVVPVLPVVHAQSPCVRQLPPHLEVGQSLPLNRLLYKPIAPQPPP KPIPPKQPPPRPEQNLPRPPCLPLRPVQHSNTCSTPQPSTSRHDAPFRSQIPNPEVGFRF DTSFLVQHILKWTFDMFSNYKQFGIPSEVCELPLKEVGSSFSSYDEYYKTFYPLLLTNTF EELAGEWLKNKESGKVVTQNLKVVAHEYSHSVWNVSFTASIIASDDSRQMFPREEDLVIL WLPQNRGAYSWHEQDLLDPQEQFGYVQRSNVCNGGVGQCPTLNLMIKTLGNVRLANKQAV RCDVVGSLVSTMREFRAICLLNGSSMRKPLLAPHVSYFQPGPEVIPSLNLPDYNLDQMRA VTTGLSVIRNQQLTPKICLIHGPPGTGKSKTIVGMLQKLFSEGVQSMTPPVNRHSEPRRM RVLLCAPSNAAIDNLMKKIIPVFKEKCRNIQGNCGDINLVRLGNERTISKNLKPFSLDSQ VKNKTQRAQMSQDSDIHRRRAQLDENIDKISKILPKLQKKEEMYHELAAQKSRMLQERET LSLQLKKSRIRKQETQAQVLQDAHMVCCTLSTSGSTVLESAFRRLGHKPFSCVIVDEAGQ ATETETLIPLLYHCNALILVGDPHQLPPTVISQKAKELKYGQSLMARLVKNLARYCKENK KPSPVVFLSCQYRMHPEICEFPSKHIYCKALKTDSETAERRGNIGWPLLPYRVFDVTDGQ EVKEGASFSNLKEVQLVVFLLRLMAEKQQVKVGVITPYNAQKDRINREMAKVVNKNLTVD VDTVEGFQGREMDCVIVSCVRASHEQGGIGFLGNRQRLNVTITRAKFSLFILGHLRTLQE NQDWGALIKDAATRDVIISTNEMTFKTDARKIFKKELTRSSSYPLREPGPPSAAPCPNAD PPRPAPFQLRRSSEPALFAQGRDSPQQPWSASPPQDADRPRDPRLVVQTPQHRPDWNPGA ERIRLPQAEIRRDPRAERDPRGCNSPEQRHPTGYQNQRWAVRERDREQHRSPITAPYPGD GVNRPPRDPSQRDYNCYSATAFNHHTHTHPRKRDPDPRWIPPTHSKRGRERTDH NT seq 7365 nt NT seq  +upstreamnt  +downstreamnt atgatgagcatgtgccgttggtgcacgtctttgggtgacgatgttgcaaaactgctccag aggtactgggatctgtcttggttagcagaggatgaggaggcagtcaacgagaaggtggca ctcaacgatgacctcgacaagtgcctggagtgtgtggtagcgtaccatcgggcgaaggag gagttacctggactgcaccggagtctatgggagttggagacgtccaggctcctggacttg ttttcacatgcagcaaaagacgcacagccggcaaaggacctcagctatgtagaagaggac ggccgggaaatcggagtgtcaaacatcagccccgcagtgtacgaggaccgtcttggggtt cccctgtcagaggtcctcaaatacccctacctgctggcatcccctgaattgagtgaaatg tgtgttgaggcaatttgtaagatggaggaatataactccttccgggtgtgttctaaagat ccagggatctacctcctcctcgtccaccccaacgagacggttaggcggtgggcaattggt gctgcaaggtctttaggtaaggtggaccgagacgacttttatgaccttcaggacatcttc acctgcatgttctacattgtcgagctgagaatcccccagaacttcccagacatggatacg tcctatgatccgacgactaagatgacattgctgcaaccgcatctttacgattccaaaaat gcaaaaaactactggttgggtatctgtatgcttctgacacagctggatgcccaggctatg gactccctgttcctggggccagacaaacaggccaacatactgctctgtatccttaatgcc ttgaaggatgaagaaccatccaacgagatggatcccttctggccagtcttgcaatgtttt atggtgatcttggattgtttgggctccaggttttggggtcagattgagccatcccaagcc ttccaggccatcacacaaagccctagctactctggagagctcgaaagcatccgacaacaa accatgatatcacgggttaaaacagaaactacatatgatgatgacatggtgacctgcagt cagatggtatatgacagtaacaccaaagtgaccaagggaagcagacgctcacgtggtgtg gatagcaatgtggtctatgaggatatgagttctctggtcaacctcctgcattcagacgtt ggacaggcattgcgtgtgcacgacagcacatttctctggttcatcccctttgtaaaatct gttatggaccttgacgaacacagcgtcctatacattactgaggttgtccactacctatgt ggggagatcagcacagacctcccgaagccccaggttcgcatatgtgacaaggtcacagag ttcttcactcttattctggtccatatcatcgaattgcacctggggagtggccgcatgaat atgctctattactgcgctcccaagtgggtgggcgtgttagtgaaatgtgccaccctgcct ggtgacgctttcgtccatacctctgaatgtccagtttctcactctgtgtcttccacatcc tccttgagggtcagtgtgccccgaaaggcctctactagcagggctgttccacaggcatgc atgcatatcatccggtccctgctgaaggaagggaccaggttgaaccccaacagcaagtgc caccacttcctgaaccttctgaacaagcacctcagagacgggcaacagagggagtggaag ctgattaggccagagattcaggagcttcagatctgtttgaaggactatgtcaagatgatg atgaacaggccaaacataagtacttctccacctgaaccgctggacattgaggcagggcct gtggcaccaaccacactaccacttcagtcaagcaatgacccctcgggacctagcagctta gctgaatttaaccctcctataaaacaggaagggttgtgggatgatgtcgaaggcagtaca tctggtggtggggatttttctggagttcagagggggtgggacataaacatagcgttggtg aaaaaggagcccctaatgcctgaagaggagtttttagagccgactaatgattctagacca acccaagacaacttaacttccttgagggcagatccagagaaaatacaggtgatcaaatcc agactcggccagcttatgaccaagaagtccaagtctgagagagcgaggccctctgtaggg ctcagtgaattcggtaaagagaaacctgaaaatctgctcaccagccgtagagaggaggca tccaacctccaaggcattagcagacaccctccatgcctccaagaatccatagacaatgtg cctctctctgttttaaaaagtaatcttaaagcgaaaaaaggctccaaatcctcacgagat cggagtaaaggaaactcgagacaatttgaccgaccacaatccccaccaaagtcaacttca gatgtaattgttatatctgatgatgaggctacattagatgttggtagagcaagaaggcct gagtgtttgtctgagaactaccaaattaaaaatgaaccagatgcctctgacaagaatcgt agtccctggcgtgattacgatggagacatgagtgaatctcaggtgtttgaatttgaaaca caggaagatatggtgtctgcctggtccaaaagagattcggaaagtaacatgccacccgaa aagcccaaagacgatagccctgtcagtccaacttcaagagagcctttatcaagctgggaa tgtgatacacaaccgatctatgacgaggatatcgaaagagcctgtcagcaggttgagaag gagcttgagaagcctaagaccccacctcaagggctcaaacgggccattgttgtcaaaaaa agaaatattcttgttgatgcaaaaccattggcctccaaatgcctgagcaagaaacctacc gtggtagaaaaacgattcaaagagcctgtgaaggatgctccccatgcagtcacaccgcca ttgagaaaaagcagttcaacggtacgttcaaacagactggaaactgagacacactcttcc ttaaccacatcagctatctcacacaaaacgtcattaactccagccattgtccctcctaaa aaagtcagaaaagccatagagcctgtgtccacagctgagaagcttggccttaagaagaag gtgcgaaaggcctttgatctttcccagggatcacgtgattctgttggtgatctgaggcac cacggcgctacagtcaatgtcccacaggccaagaagctgacccgacagaccaagaggtcg aaggtgaccttccctcagaagagagtggtcaaagggagtaacaataagctgttccagttc ttcaggcagagcaagcaggcattgggagccggaatctctgaaaaggcagagccaatgaag agaaatccgaaaaagattgatgaaattcaaactcccagttttgctacagaggaggacgat gaagacgaggacttgcagtgttcccagcaagatcctgcccgtcatgaggaacagctgacg ttcaatcgcagctctcaaagagccaatgaggacaaaccagcatcctctaatacagtgagt agtgtgttgtctaacatggacaggcagatctctccatactttcaaaggaatgatgtcaca cctggaccttctggtcaagtccccaatagcaatgaaggtgaagatgatgatgaagactgg atgcacctcacccaaatggaaccaactgaaatggagatgtgcacgcagttggaggaggaa gaagatttcttctacacacagcgggaccctgtagacatggacattgacgcagacagccag aggccctttgaggataaaggagggtcttcagacttgacatggtttaaacaggcagacgaa ggtcaagaggctccacttgccacacagacttttaagaaaccggctactccgccaccctca cgctctaacttgactcaggatgatgagcgcttgttcctgaaaccaggaatgtctcctatg tcagttaaaaaggccaagccgtccaccaccaagatctacgcaacctcaagctccaggagt gcctccttggtgcaagagatggagagaactgccaatgctccattttcggcttcttctgca cctgctggaagaggtaggcctgcccggccagttgtgcctgcccggccagttgtgccagtc ctgccagtcgtgcatgcacaaagtccctgtgtacgacaacttcctcctcatcttgaggtt ggtcagtctcttccactgaatcgactcttatacaaacccatcgcaccacaaccaccacct aaacccattccaccaaaacaaccaccacccagacctgaacaaaacctcccccgtccacct tgcctgcccctccgccctgtccagcacagcaacacatgttccaccccccagccctccacc tccaggcatgacgcccctttccgaagtcagatacccaacccagaggttggcttcagattt gataccagcttcctagttcaacacatcctgaaatggacctttgatatgttcagtaactac aagcagtttggtataccctctgaggtatgcgaattaccactgaaggaagtaggatccagc ttcagctcttatgatgaatactacaagaccttttaccccctgcttctcaccaacactttt gaggagcttgcaggtgaatggctaaagaacaaggaatcgggaaaggtggtaactcagaat ttaaaagttgtcgcacatgagtacagccacagtgtttggaatgtcagctttacagcgagc attattgccagtgatgactcccgtcagatgttcccacgggaggaggacctggtcattctg tggctgccccagaatagaggtgcttactcttggcatgagcaggacctcttggatccccaa gaacaatttggatatgtgcagagatccaatgtctgcaacggaggcgtgggccagtgccca actctgaacctgatgataaagaccctggggaatgtgaggttggcgaacaagcaggcagtg cgctgtgatgtggtgggctccctggtcagcaccatgagggagttcagggcaatctgtctg ctcaatggcagctctatgcgcaagcccctcttggccccacatgtctcctacttccaacct ggcccggaggtcatccccagcctcaacctgcctgattacaacctagaccagatgagggcg gtgacaaccggtttgtctgtcatcaggaaccagcaactcaccccaaaaatctgcctgata cacggacccccaggaacgggaaagagcaaaaccatcgtgggtatgctgcaaaagctgttc tctgagggagtacagagcatgactcctccagtaaacagacattctgaaccccgacgcatg agggtcctcctgtgtgccccgtccaacgccgccatcgacaacctgatgaagaagattatc ccggtcttcaaggagaagtgcaggaacatccagggtaactgtggggacatcaatctggtg aggcttgggaacgaaaggacaatctccaagaatttaaaaccttttagcctggacagtcag gtgaaaaacaaaacacaaagggcccagatgtcacaggactcagacatccaccggcgcaga gcacagctggacgagaacatagacaagatctccaagatattgccaaaactgcaaaagaaa gaggaaatgtaccatgagctggcagcacagaagtccagaatgctccaagagagagagaca ctcagcctccaactcaaaaaatctcgtattaggaagcaggaaacccaggcccaggtactg caagatgcccatatggtctgctgcaccttgagcaccagcggcagcaccgtcctggagtcg gcgttccggcgcctgggacacaaaccctttagctgcgtcatcgtggacgaggcagggcag gccaccgagacggagactctcatccctttgctctaccattgcaacgccctcatcctggtg ggagacccccatcaactgccccctacggttatctctcagaaagcgaaggagttgaagtac ggccagtccctgatggctcggctggtgaagaacctggctcgctactgtaaggagaacaag aagcccagccctgtggtcttccttagctgccagtaccgcatgcaccccgaaatctgcgag ttcccctccaagcacatctactgcaaggcccttaaaactgacagtgagactgcagagagg agggggaacattggctggcctctcctgccctaccgtgtgtttgacgtgaccgacggtcag gaggtcaaggagggagcgtcgttcagcaacctgaaagaggtgcagctggtagtgttcctg ctgaggctgatggctgagaagcagcaggtcaaggtgggggtcatcacgccgtacaatgcc cagaaggaccgcatcaaccgcgagatggccaaggtggtcaacaagaacctcacggtggac gttgacactgtggaaggcttccagggccgagagatggactgtgtcattgtctcctgcgtc agggcgagccacgagcagggcggcattggattcctggggaatcgccagaggttgaatgtg accatcacccgggccaagtttagcctgttcattctgggccatctacggacactccaggaa aaccaagactggggtgcgctcatcaaggatgctgcgacacgagacgtcattatatcaacg aatgagatgaccttcaagacggacgccaggaagatcttcaaaaaggagctgaccaggagc tcgtcttaccccctcagagaaccaggccctccctctgctgccccctgtcccaacgccgat ccccccaggcctgctcccttccagctacgccgctcttctgagccagccctgttcgcccag ggcagggactccccccagcagccctggtcggcatcccctccccaggacgctgacaggccc agagacccccgtctggtagtccagacaccccagcatagaccagactggaatccgggagct gaaagaatcaggctcccacaagccgagatcagaagagacccacgagctgagagggatcca cgaggatgcaacagcccagaacagcgtcacccaactgggtaccaaaaccagagatgggct gtcagggagagggacagagagcaacaccgttcaccaatcaccgcgccatacccaggagat ggagtcaacagaccaccgagggaccccagtcagagagactataattgctacagtgctaca gccttcaaccaccacacacacactcacccccggaaacgagacccagacccccgatggatc cctcccacccactccaagagggggagagagaggactgaccactga

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