KEGG   Oncorhynchus keta (chum salmon): 118374405
Entry
118374405         CDS       T09424                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    118374405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oke03021]
    118374405
   03036 Chromosome and associated proteins [BR:oke03036]
    118374405
Transcription machinery [BR:oke03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     118374405
   Coactivators
    SAGA/TFTC/STAGA complex
     118374405
Chromosome and associated proteins [BR:oke03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     118374405
    STAGA complex
     118374405
    TFTC complex
     118374405
    SAGA complex
     118374405
    SLIK complex
     118374405
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_TEP1_2nd TFIID_NTD2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_IFT140_1st RMC1_N Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR19_1st Tricorn_2nd Beta-prop_VPS8 PEP5_VPS11_N WD40_like Beta-prop_WDR75_2nd PROPPIN WD_LRWD1 Nbas_N Beta-prop_ELP1_1st
Other DBs
NCBI-GeneID: 118374405
NCBI-ProteinID: XP_035616711
LinkDB
Position
10:67077179..67081083
AA seq 607 aa
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGTKLSQSAEEMAANLTVQTESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAVLPWGQEVSGVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLALLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHIQVEVTSSPRTDYQLYGTTGAGATGATTTAPNSTSSWSGADGPERGE
AAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNTAEVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRTDVSHIRLACDVLEEEADEGDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHSTTHADGSSSELVGVYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggacactgaaagttccctgaaggggactaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcagacagagtcggggtgtgcaaacattgtctctgctgcg
ccttgccaagctgaccctcaacagtacgagacccaattttccagacttcgcaattttctt
tcagaagcggtgttgccatggggccaggaggtgagcggcgtcctgtacccactcttcgtt
tacctccacctggacatggtacgctgcagcctgaagggggcggtggatggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
catgtcctcacccagcaggatgtcaccgccaaccccaagctcctggccttactcgaccac
aagtacgtggtgaacctgacggagcctgcctacagttacctgttacgctacctgcagagc
gaagacaacagtaccctctgcagggccctcagcacccacatccaggtagaggtcacctcc
tcaccacgcaccgactaccagctgtacgggacgacgggtgcgggagctaccggggccacc
accacggcccccaactctacctcctcgtggtcgggtgcggatggccctgagcgaggagag
gcggcaggggtggaggtccccacagggatcccgcagagcgaggcggccctggaggcactg
caggactgcattaagaaggtgcgtgaggggccgccgtcactcaccaccgtgtgcttctat
gccttccagcacacagagcagctactgaacacggcagaggtgtcggctgacagcaagctg
ctggccgccgggttcgacagctcggccgtcaagctatggagtcttagggccaggaaactg
aaggccaggccacaccggaccgacgtgtcacacatccgcctagcatgtgacgtcctggaa
gaggaggcagatgaaggggacggctcaggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacagccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctgggcagcttcaccaacacggccctctaccagggt
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctactttgccagcggc
tcccacgaccgcactgcccgcctctggactttctccaggacctaccctctgaggctctac
gccggccacctagcggacgtggactgcgtcaagttccaccccaactcaaactacctggcc
acaggctcaacggataaaactgttcgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccccgtgttgtccgtagccttcgcgcccaatgggaagtac
ctggcatcggcgggcgaggaccaacgggtgaagctgtgggacctggcctcaggggctctg
gtcaaggacctgaggggccacacagacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggacaactcagtcagggtgtgggacatccgaaactcc
cacagcacaacccatgcggatggctcgtccagcgagctggtgggggtctacacaggcaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaaca
gcgcaggagaaacatggacagtag

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