Oncorhynchus keta (chum salmon): 118374406
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Entry
118374406 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118374406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118374406
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118374406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_14
ANAPC3
TPR_8
ARM_TT21
TPR_7
TPR_MalT
APOBEC3
Motif
Other DBs
NCBI-GeneID:
118374406
NCBI-ProteinID:
XP_052359273
LinkDB
All DBs
Position
Unknown
AA seq
730 aa
AA seq
DB search
MADNNTDQEKAIAANALEAFTAGNYEDSLKHLGKLQELNKEDYKIALNKAIAEFYKSGQT
TTCTLKQTLIAMKNQVHTSMEDIDGLDDVENSLLYYNQAIIHYHMRQYSEAIAIGERLYH
FLEPFEEKFALAVCFLLVDLYLLTYQPEKALHLLAVLEKLSVQGNNKNGKGESVNKDGRN
QKAEFIDMIEAAKSKMHQYKVRAYIQMKSSKACKREIKSVMNTAGNSASSLFLKSNFEYL
RGNYRKAVKLLNSSNIAEHPGAIKTGECVRCMFWNNLGCIHFAMGKHNLGIFYFXKALQE
NDHTCAQLGTVGATGNGQSKQFSGIPMCALLANKRYELLYNCGIQLLHIGRPLAAFDCLM
DAVQVYHSNPGLWLRLAECCIAANKGSLEQDNKGLPSKKGIVQAIVGQGYHRKIILASQS
TQNTIYSDGQSAAIPVASMEFAAICLRNGLVLLPDHQQQENKAENGSKTTSQSGSTESGS
ENSDACSGKGQEGDKFLSAAPSSPLRKQEVENLRCSLLACSAYVALVLGDNLMALNHAEK
LLHQTKLSGSLKFLGHLYAAEALISLDRISEAIGHLNPENVTDVSMGVLSSEQDQGPDKG
DLEPVESSGKQTPLCYPSTVSSARAIMLFNLGSAYCLRSEYEKARKCLHQAASMVNTKEI
PPEAILLAVYLELQNGNTQLALQIIKRNQLLPSVLQAPSPDTRKKPVPSSFQPVQPPIQM
PSPFTTVQRK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacaacacagaccaagaaaaagcaatagctgcaaatgcgttggaggcgttt
acggctggaaactatgaggactctttgaaacaccttgggaagctgcaagagttgaacaag
gaggactacaagattgctttgaataaagcaatagctgaattctacaagagcggccaaacc
accacatgcacactgaagcagactcttattgcaatgaaaaaccaggttcacacttcaatg
gaggatattgatggtttggatgatgtagaaaacagtcttctctactacaatcaagctatc
attcactaccacatgagacagtactctgaagctattgctatcggagagaggctgtaccat
tttctggagccgtttgaagagaagtttgctctggcggtctgcttcttgctggtggatctg
tacctgctaacgtaccagccagagaaggccctccatctccttgctgtgctggagaaactg
tctgtacagggaaataacaagaacggcaaaggggagagtgtcaacaaagatggtcggaac
cagaaggcagagttcattgacatgatcgaagcggcaaaatccaaaatgcaccagtacaaa
gtgcgagcgtacattcagatgaagtcttcaaaggcctgcaaaagggagatcaagtctgtg
atgaacacagcagggaattctgcttcctcactcttcctcaagagtaactttgagtacctg
agaggaaactaccgcaaagcagtgaagctcttaaacagctccaacatcgcagagcaccct
ggggccatcaaaacaggtgaatgtgtgcgctgtatgttctggaacaatctgggttgcata
cactttgccatggggaaacacaacctaggcatattctacttcnaaaaggccctgcaggag
aacgaccacacgtgtgcacagctggggacggtgggggcgacggggaacgggcaatctaag
cagttctcgggcatccccatgtgtgcgctgctggccaacaagcgttatgagttgctgtat
aactgtgggatccagctgctgcacatcggccggcccctggcggctttcgactgcctgatg
gatgctgtgcaggtgtaccactctaaccctggcctctggttacggttggcagagtgctgc
attgctgccaacaagggtagcttagaacaagacaacaagggtcttccgagtaaaaagggc
attgttcaggccatcgttgggcagggctaccatcgcaagatcatcctggcatcacagtcc
acccagaacacaatctacagtgatgggcagtctgcagccattccggtggccagtatggag
tttgcagcgatctgtctgaggaacggccttgtcctcctccctgatcaccagcagcaggag
aacaaggcagagaacggctccaagacaaccagccagtcaggcagcacagagagcggctca
gagaacagcgacgcctgcagtgggaagggtcaagaaggagacaagttcctttctgcagca
ccgtcttcacctctgaggaaacaggaggttgaaaacctcaggtgttccctcctggcctgc
agtgcctacgtggccctggtgttaggagacaacctgatggccctgaaccatgcagagaag
ctccttcaccagaccaagctgtctggatcactcaagttcctgggacacctgtatgctgca
gaggccctcatatccctggaccggatctcagaggccatcggtcacctcaacccagagaat
gtcactgatgtctccatgggggtgttgtccagcgagcaggaccaagggccagataaaggg
gatctggagcctgtcgagtcatcagggaagcagactcctctgtgttaccccagcacagtg
agctcagcccgggccataatgctgttcaacctgggcagtgcctattgtctgaggagtgag
tatgagaaggcccgcaagtgcctgcatcaggccgcctccatggtgaacaccaaggagatt
cctcctgaagccatcttactggctgtctacctggagctgcagaacgggaacacacagctc
gccctacagatcatcaaacgtaaccagctcctcccctcagtgctccaggcgccctctcca
gacacacgaaagaagcctgttccctcctccttccagcctgtccaaccacccatccagatg
ccctcacccttcacaacagtccagcgcaaatga
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