Oncorhynchus keta (chum salmon): 118374514
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Entry
118374514 CDS
T09424
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118374514 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118374514 (smarca2)
03036 Chromosome and associated proteins [BR:
oke03036
]
118374514 (smarca2)
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118374514 (smarca2)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
118374514 (smarca2)
Chromatin remodeling factors
BAF complex
118374514 (smarca2)
PBAF complex
118374514 (smarca2)
GBAF(ncBAF) complex
118374514 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
BRK
HSA
QLQ
ResIII
HDA2-3
DEAD
Pepco
Motif
Other DBs
NCBI-GeneID:
118374514
NCBI-ProteinID:
XP_052335855
LinkDB
All DBs
Position
25:complement(49973358..50187968)
Genome browser
AA seq
1615 aa
AA seq
DB search
MSTPTEHAGGMSQPHPGPSPCPGRSPGPGPSPSSGPPSGPPSLQGQGAGDYLQDTMLPMH
QPMEGVDEKGMGDETNYGQMKGVGMRALHSGMGPSQSPLDQHINQGYMPPQPSPLGVPEH
ASSPLSRGGPTPPMPPQMSPVPSGSMIPQMDPQSAMGPQGPLGRGCSSFSPVQLQQLRAQ
ILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQQQQQPSTGSPYSRPPGMSSMSGPQSGP
GPTITMPGQNQTHGPKPWPEGQGGDTPSNPQKLLAPPPSGRPSPAPPQAPPPGPMSGPSI
THQPQGQQPSPVITLQQKQNRVTPIQKPQGLDPTEILQEREYRLQARIAHRIRELESLPG
ALPPDLRSKATVELKALRLLNFQRQLRQDVVQCMRRDTTLETALNSKAYKRSKRQTLREA
RMTEKLEKQQKMEQERKRRQKHQEYLNSILQHAKDFKDYHRSITAKMQKQNKAITTWHTN
TEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTDLVYE
HKAAQAANMKKKKKKQKKKNIDESGEGMSGIGPDGEPMDESSQMSELPVKVIQTETGKVL
QGLDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEDEDEEEVPGASSRPDSQSEEKRI
IDPNSGEFPEKVTKQIIESAKQDVDDEYTVPETELTIFQQSYYGVAHAIIERVDKQSSLL
INGMLKHYQVQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII
VPLSTLSNWVYELDKWSPSVVKISYKGTPAMRRGLVAQLRSGKFNVLLTTYEYIIKDKQI
LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLL
PTIFKSCNTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP
EKVEYVIKCDMSAIQRVLYRHMQGRGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHP
YMFPHIEESFAEHLGFPNGVISGHELYRASGKFELLDRILPKLHVTNHRVLLFCQMTSLM
TIMEDYFAYRNFLYLRLDGTTKSEDRAALLKKFNEKGSQYFVFLLSTRAGGLGLNLQAAD
TVVIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI
QAGMFDQKSSSHERRAFLQAILETEEQNEVGHGGVGIKIKCSALQEEEKSQVAMEEDEVP
DDETLNQMIARNEDEFELFMSMDLDRRREDARNPKRKPRLMEEDELPSWIVKDDAEVERL
TCEEEEEKIFGRGSRRRGDVDYSDALTEKQWLRAVEDGNLEEMEEEIRLKKSRKRRRRGE
KDGGREEGGEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYRDRSNRQLSEVFVQL
PSRKELPEYYELIRKPVDFKKIKERVRSHKFRSVSDLEKDVMLLCHNAQTFNLEGSQIYE
DSIVLQSVFKSARQRIVKEEESEEDSDDDDDDDDDDDEEESEAESNSVRVKIMLGKDGGG
SSIGARHHNKDKGKKRLSRSKAKPVISDDDSDEDQDDNGMGNKLSKRTLSFKDNS
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctacggagcatgcgggtggtatgtcccagccccacccgggtccctctccg
tgcccaggccggtccccaggaccaggcccctcccctagctccggaccccccagcggaccc
cccagcctacaggggcagggggctggggactaccttcaggacaccatgctccccatgcac
cagccgatggagggcgttgatgagaaggggatgggagatgagacgaactatggccagatg
aagggagttgggatgagggcactacacagcggaatgggcccttcacagagccctctggac
cagcacatcaaccaaggctacatgcccccacaaccctcccccctgggtgtcccagagcac
gcttccagccccctatccaggggcggccctacgcctcccatgccccctcagatgtcccct
gtcccgtcgggctccatgataccccagatggacccccagtcagccatgggtccacagggg
cctcttggtcgtggctgctcctccttcagccctgtccaattacagcaactccgggcccag
atcctggcctataagattctggggcggggccaaccgcttcctgaaaacctccagctggcg
gtccagggcaagaggagtctgcccaccatgcagcaacaacagcagcagcagccgagtact
ggcagcccctacagcaggcctcctggtatgtcctctatgtctggccctcagtcaggccct
ggtcccaccatcactatgccaggacaaaatcagacacacggacccaaaccctggcctgaa
ggccaaggtggtgatactcccagcaacccccagaagcttctagctccgccccccagtggt
agaccctcacctgccccaccccaggcccctcctcctggacccatgtccggcccctctatt
acccatcagccccagggacagcagccgtcgcccgtcatcacactgcaacagaaacagaac
cgcgttacgcccatccagaaaccacagggcctggaccccacagagatactgcaggagaga
gagtacaggctgcaggctcgtatcgctcaccggatccgggagctggagagtctacctgga
gctctgcctccggacctgaggagtaaagccacagtggaactcaaggctttgagacttctc
aacttccaacgacagctgcgtcaggatgtggtccagtgtatgcgtagagacaccaccctg
gagacagccctgaactccaaggcttacaagaggagcaagcgccagacgctgagggaggct
cgcatgacagagaaactggagaaacagcagaagatggaacaggagaggaaacgcagacag
aaacaccaggagtatctgaacagcatcctgcaacatgccaaggactttaaggactaccac
cgctctatcactgccaagatgcagaagcagaacaaggccatcaccacctggcacactaac
acagagagagaacagaagaaagagacagagaggatcgagaaggagaggatgaggagactc
atggcagaggatgaggagggctacaggaagctgattgaccagaagaaggacaagcgtctg
gcgtatctgctgcagcagactgacgagtacgtagctaacctcactgacctagtctacgag
cacaaggctgcacaggcagccaacatgaagaagaagaagaagaagcagaagaagaagaat
attgatgagagcggggaagggatgagtggcatcggacctgacggggagcccatggatgag
agcagtcagatgagtgagctgccagtcaaagtgatccagacagaaacggggaaggttctg
caggggctcgacgcccccaagtcctcacagttggaggcctggctagagatgaaccctgga
tatgaagtagccccaaggtcagacagtgaggagagcggctcagagtttgaggacgaggat
gaagaggaggtcccaggagcgtccagccggccagactctcagtctgaggagaagaggatc
atcgatcccaacagtggcgagttcccagagaaagtaaccaagcagatcatcgagtctgca
aagcaggatgttgatgatgagtacacggtgccagagactgaactgaccatcttccagcag
tcctactacggtgtggctcacgccatcattgagagggtcgacaaacagtcttcgctgctc
atcaacggcatgctcaaacactaccaggtgcagggtctggagtggatggtgtctctgtac
aacaataatctgaatggtatcctggctgatgagatggggctgggcaagaccatccagacc
atcgccctcattacatacctcatggaacacaagagactcaacggaccctacctcatcatc
gttccactatcgactctgtccaactgggtctatgagctggataaatggtctccgtccgtt
gtgaagatttcctacaaggggacccctgctatgagacgaggcctggtggctcagctccgc
agtgggaagttcaatgtcctcctcaccacctacgagtacataattaaggacaaacagatc
ctggccaagatccgttggaagtacatgattgttgatgagggtcaccgtatgaagaaccac
cattgtaagctgacccaggtgttgaatacccattacgtagccccacggcgcctcctcctg
acgggcacgccactgcagaacaaactccctgagctctgggccctgctcaacttcctgctg
ccgaccatcttcaagtcctgcaacactttcgagcagtggttcaatgccccctttgccatg
accggggagagggtggacttgaatgaggaagagacaatcctgattatccgccgtctccac
aaggtgctccgccccttcctgctcagacgactcaagaaggaggtggagtcccagcttcca
gagaaggtggagtatgtcatcaagtgtgatatgtcggccatccagagggttctgtaccgt
cacatgcagggcagaggaatcctcctcaccgatggatcagagaaagacaagaagggtaaa
ggaggagcgaagaccctgatgaacaccatcatgcagctgaagaagatctgcaaccacccc
tacatgttcccacacattgaggagtcctttgctgagcacttaggcttcccgaacggtgtt
ataagcggacacgagctgtaccgtgcatcggggaagtttgagctgctagaccggatcctt
cccaagctgcatgtcaccaaccacagagttctgctgttctgtcagatgacatcactcatg
accatcatggaggactactttgcttaccgcaatttcctctacttgcgcctcgacggcacc
accaagtctgaggaccgtgcggcgctgctgaagaagttcaatgagaaaggttcccagtac
tttgtgttcctactgagcaccagagccgggggactgggcctcaacctgcaggctgcggac
actgtggtcatctttgactctgactggaaccctcaccaggacctccaagcccaggacagg
gctcatcgtattggtcagaagaacgaggtgcgtgttctgcgtctgtgtacggtcaacagt
gtggaggagaagatcctagcggctgctaagtacaaactgaacgtggaccagaaagtgatt
caagccgggatgtttgaccagaagtcctccagccacgagaggagagcctttttacaggcc
atactggaaacagaagagcagaatgaggttggtcacggtggcgtgggaataaagattaaa
tgcagtgccttgcaggaggaagagaaaagtcaggtggctatggaggaagacgaggtgcct
gatgatgagactctgaaccagatgatcgcccgtaatgaggatgagtttgagctgttcatg
agtatggacctggaccggcggcgggaggacgccaggaaccctaaaaggaagccacgtctg
atggaggaggatgagctgccatcttggatcgtcaaggatgacgcagaggtggagcggctc
acttgcgaggaagaggaggagaagatcttcggccgaggatcacgcaggagaggcgacgtt
gactacagcgacgccctgacagagaaacagtggctcagggcagtagaggatggtaacctg
gaggaaatggaggaagagatccgtctgaagaagtcgaggaagaggaggagacgaggggag
aaggacggagggagggaagagggaggagagaaggcaaagaagaggcgtggacgtccccct
gccgagaagctgtcccccaacccccccaaactcaccaaacagatgaacgccatcattgac
acagtcatcaactacagagacaggtctaacagacagctgtcagaggtgtttgtccagctg
ccgtccaggaaagagctgccagagtactacgagctgatcagaaaacctgttgacttcaag
aaaatcaaggagcgtgtgcggagccacaagttcaggagtgtgtctgacctggagaaggat
gtgatgctgctctgtcacaacgctcagacttttaacctggaggggtcacagatctatgag
gactccatcgtgctccagtctgtgtttaagagtgccagacagagaatcgtaaaggaggag
gagagtgaagaggacagcgatgatgacgatgatgatgatgatgatgatgatgaggaagag
tcggaggcagagtctaattcagtgagggtgaagataatgctaggtaaggacggtggcggt
agcagcatcggagcccgtcaccataacaaggacaaaggcaagaagagactgagtcgctcc
aaggccaaacccgtcatcagtgacgatgacagcgacgaagatcaggatgacaacggcatg
ggaaacaaactcagcaaaaggaccctgtctttcaaagataattcgtaa
DBGET
integrated database retrieval system
