Oncorhynchus keta (chum salmon): 118374900
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Entry
118374900 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118374900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118374900
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118374900
Spliceosome [BR:
oke03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
118374900
Complex B
118374900
Complex C
U2 SnRNP specific factors
118374900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
118374900
NCBI-ProteinID:
XP_035617274
LinkDB
All DBs
Position
32:complement(33770263..33777668)
Genome browser
AA seq
927 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFSLGGGGGGKKEELHVPQKSHTSFGGAGTAGGYGKNQQLPAF
YKIGTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRQQFRSGGGSDSEDDPLDAFM
AQVEDQAAKDMKKLEEKEKEKKVEKGIRDDIEEEDEQEAYFRYMAENPTAGLTAEDEDEN
IDYDSDGNPIAPTTKKIIMPLPPMDHSEIDYPPFERNFYNEHEELLSLTGTEVFELRHKL
NLRVSGAAPPKLSTSFAHFGFDEQLMHIIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKT
GSGKTAAFIWPMLVHIMDQKELETGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVA
VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVXKKATSLQRVTYLVFDEADRMFDMGFEY
QVRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEIMP
SGVEKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGHSLGLLHGDMDQSERNK
VIADFKKKSLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAY
TLLTSKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLG
YRERPGLGAESSERSVGAAMGNYEGYSKTTGAMGDRMSAMKSAFQSQYKNHFVAASGMVP
KLTTKSSSSSGWTSAGSLSSVPTGAPEGPDRPRGPPSLAMAPPAALGMGTKMPGFTSAGS
LSSVSDSQATAPQGNAAPPSPREGPRDRHGDDRSRHGDGHYRDRRDRSERHSGGGERDRY
GERDRHADRDRYGDKDRHGSSGRHGDSRNGDGSRRDRERDDCRGDRESGDRAGSEGRGDR
AEGKGDREENSFAVPDPPKRKKSRWDN
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaagggtggcccaagtggtaagcgagggtttggttttggaggattttcc
cttggtggtggaggaggaggaaagaaagaagaacttcacgtgcctcagaaatcccacaca
tccttcggaggcgcagggacagcaggaggttatggcaagaaccagcaactccctgccttc
tacaagataggaacaaaaagagctaattttgatgaagagaatgcatattttgaagatgat
gaagaggagtcaagcagcacagatttgccatatatcccagctgagaactcccccacacgg
caacaattccggtctggagggggctcagacagtgaggatgatcctctggatgccttcatg
gcccaagtggaggaccaagcagctaaagacatgaagaaactggaggaaaaagagaaggaa
aagaaggttgaaaagggtatacgtgatgacattgaagaggaagatgaacaagaagcctac
ttccgctacatggcagagaatcccacagctgggctgaccgcagaggacgaggatgagaac
atagactacgacagtgatgggaatcccattgcccccaccactaagaagatcatcatgccc
ctgcccccgatggaccactctgagattgactacccaccttttgagaggaacttctacaac
gagcatgaggagcttctcagcctgacaggcaccgaggtgtttgagctgagacacaaactc
aacctgcgggtgtctggtgctgcccctcctaaactctccaccagcttcgcccactttggg
tttgacgagcagctgatgcacataatccgcaagtcagagtacactcagccaacacctatt
cagtgccagggagttcccattgccctgagtgggcgtgacatgattggcattgcgaaaact
ggtagtggcaagactgcagccttcatctggcccatgctagttcacatcatggaccagaag
gaactggagactggagaggggcctatcgcagtcatcgtgtgccccaccagggagctctgt
cagcagatccatgcggagtgtaagcgttttgggaaagcctactccctgcgctcggtggcg
gtgtatggaggaggcagcatgtgggagcaggccaaggctcttcaggagggagcagagatt
gttgtgtgcaccccgggtcgtctgattgaccatgtgnaaaagaaggccacctctctgcag
agagtgacatacctggtgtttgatgaggcagatagaatgtttgatatgggctttgagtat
caagtgagatccattgccagccatgtccgacctgatcgacagactcttctgttcagcgcc
accttccgtaagaagattgagaggctggcgagagatatcctggtggaccccatccgcgtg
gtgcagggagacatcggagaggccaatgaggatgtgacccaggtagtggagatcatgccc
agtggggtggagaagtggggctggctgacccgccgcctggtggagtttacctcctctggc
tctgtacttatcttcgtcaccaagaaggccaactgtgaagagctggccaccaacctgacc
caggagggccacagcctgggcctgctgcacggagacatggaccagagtgagaggaacaag
gtcatcgcagacttcaagaagaagagtctgcccgtgctggtggccaccgacgtggcagcc
cgtggtctggatatcccttcaatacgcacagtagtgaactatgacgtggctcgggacatc
gacacacacacacaccgaattggccgaactggtcgtgctggagaaaagggtgttgcctac
acccttctcaccagtaaagacacatcatttgcaggagaccttgtgcgtaacctggaggga
gccaatcaaagtgtctctaaggagctgatggacttggcaatgcagaatccctggttcagg
aaatcacgcttcaagggcggcaaagggaagaagctaaacattggaggaggtggtctgggc
tacagagagaggccaggattgggagctgaaagttctgagcgtagtgttggtgctgccatg
ggtaactatgagggctacagcaagactaccggagccatgggagaccgcatgtcagcaatg
aagtcagccttccagtctcagtataagaaccactttgtggcggcgtccggcatggttcct
aaactcaccactaagtccagtagctcttcaggctggaccagcgctggaagtctgagctcc
gtccccaccggggcccctgagggcccagaccggccccgtgggcccccctccttagccatg
gcccctccagcagccctcggcatgggcaccaagatgccaggcttcaccagcgctggctcc
ctgagctctgtgtcagacagccaggccactgctcctcaggggaatgccgccccaccctca
cccagggaagggccccgtgacagacatggtgatgacaggagtcgccatggagatggccac
taccgtgacaggagagacaggagcgagcggcacagtggcgggggagagcgggaccgctac
ggggagcgggaccgccacgcagaccgcgacagatacggggacaaggatcgccatggcagc
agcgggcgccatggcgatagtcgtaatggagacggaagtagaagggacagagagcgagac
gattgtagaggtgacagggagagtggagacagggcagggagtgaaggaaggggggacaga
gctgaggggaaaggagaccgagaggaaaacagctttgcagtcccagatccaccaaaacgc
aaaaagagtaggtgggacaactaa
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