Oncorhynchus keta (chum salmon): 118375299
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Entry
118375299 CDS
T09424
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118375299
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
118375299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
118375299
NCBI-ProteinID:
XP_052312976
LinkDB
All DBs
Position
11:33054834..33195399
Genome browser
AA seq
2185 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWKRYVWQGPTSAPILFPVTEEDPILCSFSRC
IKADVLSVWRRSQRPGRRELWLFWWGDDPNFAKLIHHELTAEEDGVWESGLSYECRTLLF
KAIHNLLERCLMNRSFVRIGKWFVKPYEKDEKPINKSEHLSCSFTFFLHGESNVCTSVEI
NQHQPVYHLSDEHLTLAQQASSPFQVILSPFGLNGTLTGQSFKLSDPPTQKLIEEWNQFY
PISPSSKDKDKNDSPSEDKMEYMDWEDDSLAAVEVLVGGVRMVYPACLVLVPQSDIPAVV
PQGSSPCTAIYSGGHQVPASQREPAISSVTLTPPTSPEDAHTGTMMDSQSTLKWVKMSSA
VDGFSVDSTGHHELKIPRRLASQVVERVWQECNINRAQNKRKFSATANGTCEEELMEKVG
AWDFVEPTHRSNCNCSRHKALKQRGGGTPGQPQSACQPTHTQPPTKHKTGGDKPEKSDKQ
TKRPQTPFHHRSAACDDVTMETKAAGQRLAMRAQQEGGRFPSLHPTDGVTKTPQRHDGGV
GSAGGSSEMTGSPQPPPLSPHPCERDRGEETGDGSLKNPSTPHSQHFYQPPPEPCLAEQK
GGVGDHRGLDGLAHHFHHHHTAYPPDPLEPTVYVSSAVNLEEDGSPAPWRFFNLPRRKEA
VIPTPTLPWDKLRERERDEASGGQEVVSVTELMATSNRPLKVSEERVQMYIQRRNQYLAA
AITDDDHEPEVDPYAFEDGDVKFSFSDKKDKTGGERQPGKKHKGEDGAAGPSDDAAREAA
NARTASTSLIHETDLAVSINDLDNLFNSDEDELTPGSRRAVNGTDNTFGTKEPKPAPLDP
VSCISSADLHQMFPTPPSLEQHIMGYSPMNMGSKEYGSIEAGHGMTNLDGASSLGGHFKI
EVEEGYCSPKPQEIKDFSFVYKPELCQAFVGCSMFAPMKTLPSQCLPPIKLPEECIYRPS
WTTVGKLEMLNNPHVPSMAYLNKDSNIPSVGSAMDQDYSQSYTPQTHTPFMSNSAPPSNS
GTGILPSPATPRFSAPTPRTPRTPRTPRGPASVQGSLKYENSDLYSPASTPSTCRPINSV
EPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCICVCNMNIKGADVGVYLSDPTGE
AQYPCTCGFSAVVNRRYGNGSGLFLEDELDIIGRDSDVSREAEKRFEALRQHSLERTGGG
GRGERVPDELILLLQDQCTNPFSPMAGMEPDSLAARGPGGCPVPACVRVEERDYHSDCYM
ALEHGRQFMDNMSGGKVDEALVKSTCLHHWSKQNAVDISALCSQDVLRVLLSLQPVLQDA
IQKKRTVRSWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLVGYEYDFVVLSPFGL
PYWEKLLLDPFGSHRDVGYLVVCPDNEALLQGAKSFFRDLTAVYESCRLGQHQPISKGHP
DGIVRVGGSAAKKLAEQPVSDWFIKAASSNSDAFAKLKLYAQVCRHDLAPYLAAQPLDSS
LLTQPTPPPATNQCSSTQSSGSSSTTSACPQNSATPSLPNNNSSSVPSNNTGVANSANST
ASSGSQPSSGLQSAKPSSFPPFGTMSMQNQGQGGGTQGGQLGQQAGAQNAGLTGVDSASQ
AQSPTEPLESTMEREKVGVPTDGESHAITYPPAIVVYIVDPFTYEEPEAGSSVWTLGLLR
CHLEMLQFLPPHIRNSVSVQIIPCQYLLQPVRSEERHIYAQHLKSLAFSVFSQCRRPLPR
STNVKSLTGFGPGLAINTTLKSPERPECLRLYTPPFILAPTKDKQTELGETFGEASQKYN
VLFVGYCLSHDQRWLLATCTDLYGELLETCIISIDVPNRARRKKGSARRSGLQKLWDWCL
GLVQMTSVPWRVVIGRLGRMGHGELRDWSILLSRRNLQSLSRRLKEMCRMCGISASDTPS
ILSACLVAMEPQCSFVIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHILVFPTSAF
VQVASSNYTTDTNIDIAFNPIPDGSDAIGIFDLLDQENELVDPDIINILPSSPTTSPVHS
PGGHYHQGGDGSKGQSTDRMESHDEAPNILQQPLALGYFVSTAKAGALPDWFWSACPQAQ
NQCPLFLKASLHLHVSSVQSDELLHSKHSHPLDSNQTSDVLRFVLEQYNALSWLTCDPAT
QDRRSCLPIHFVVLNQMYNFIMNML
NT seq
6558 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttgttttgtaccaaacggggccagcttggaggattgccattccaatctattt
tgtctggcggacttgacggggatcaaatggaagcggtacgtgtggcaaggccccacctcg
gcacccatcctcttcccggtgaccgaggaggaccccatcctgtgcagcttcagccgctgc
atcaaagcggacgtgctgagtgtgtggcggcggagccagaggcccggacgtagggagctc
tggctcttttggtggggggacgaccccaactttgccaagctgatccatcacgaacttaca
gctgaggaagacggtgtgtgggagagtggtctgtcctatgagtgcaggacgctcctgttc
aaagcaatccataacctgctggagcggtgtctcatgaaccgtagcttcgtacgcatcggc
aaatggttcgtcaagccctacgagaaagatgagaagcccattaataagagtgaacacctg
tcatgctcgttcaccttcttcctccatggggagagtaacgtgtgcaccagtgtggagatc
aaccagcaccagccagtctaccacctgagtgacgagcacctcaccctggcccagcaggcc
tccagccccttccaagtcatcctaagtccgtttggtctgaacgggactctgacgggtcag
tcattcaagctgtcagaccctcccacccagaaactgatagaggagtggaaccagttctat
cccataagccccagctctaaagacaaggacaaaaatgactctccatcggaggacaagatg
gagtacatggactgggaggatgactcgctggccgctgtagaggtcctcgttggtggtgtg
aggatggtgtacccagcctgcctggtgctggtgccccagtctgacatcccggccgtggtc
ccccaggggtcctcgccctgcaccgccatctattctggtggccaccaagtgcctgcatcc
caacgagagcctgccatctcctcagtcaccctcacgcccccaacctcacccgaggatgcc
catacaggtacaatgatggactcccagtcgactctgaaatgggtgaagatgtcgtcggct
gtggacggcttcagtgtagacagcaccggtcaccacgagttgaagatccctcgcaggcta
gccagccaggtggtggagagggtctggcaggagtgcaatatcaacagagctcagaacaag
cgtaagttctcagcgacagccaacggtacctgtgaggaggagctgatggagaaagtaggg
gcttgggactttgtagaaccaacacacaggtcaaactgcaactgctccaggcataaagcc
ctgaaacagcgaggtggtggtaccccgggccagccccagtcagcatgccagcccacccac
acccagccacccaccaagcacaagactggaggtgacaagccagagaagagcgacaagcag
accaagaggccacagacacccttccaccaccgcagcgccgcctgcgatgacgttaccatg
gagacgaaggcggcaggccagaggcttgccatgagggcccagcaggaggggggtcgcttc
cctagcctccaccctaccgacggtgtcaccaagaccccccagcggcacgacggaggggtg
ggtagtgccggtggttcctcagagatgacaggttcccctcagccccctcccctcagcccc
cacccctgtgagcgcgacagaggagaggagacgggtgacggctctttaaagaacccctcc
accccccacagccaacacttctaccagccacccccggagccctgcctggcggaacagaag
ggtggcgtcggggaccaccgtggactggatggcctggcacaccacttccaccaccaccac
acggcctacccacccgatcccctggagcccactgtgtacgtaagctctgcagtcaacctg
gaggaggacggctccccagcgccatggaggttcttcaacctgcccaggaggaaagaggcc
gtaataccaacgccaacgctgccttgggacaagctgagggaaagggagagagacgaggcc
tcgggaggacaggaggtggtgtctgtcactgaactgatggccacatctaatcggcctctg
aaggtgtcggaggagcgcgtgcagatgtacattcagcggaggaaccagtacctggccgcc
gccatcaccgacgacgaccacgagcctgaggtggacccgtacgccttcgaggacggggac
gtcaagttctccttctccgacaagaaggacaagacgggtggcgaacgccagcccgggaag
aaacacaagggggaggatggagcagcaggtccatcagatgacgcagcacgggaagcagca
aacgcacgcactgcgtccactagcctaatccacgagaccgacctggccgtgtccatcaac
gaccttgacaacctcttcaactccgatgaggacgagctcacgcctggttccagacgtgcg
gtgaatggaacagataatacatttggcaccaaggaaccaaagccagcccctctggaccca
gtctcctgcatcagctcggcagacctgcaccagatgttccccactccccccagcctggag
cagcacatcatgggctactcccccatgaacatgggcagtaaggaatacggcagcatcgag
gctggacatggcatgaccaacctggacggtgcctcgtcccttgggggacacttcaagatt
gaagtggaagagggctactgcagccccaagccacaggaaatcaaggacttctcgtttgta
tacaagccggagctgtgccaggcatttgtgggctgctccatgtttgcccccatgaagacc
ctgcccagccagtgtctgccccccatcaagctgccagaggagtgcatctacaggcccagc
tggacaacagtgggcaaactggaaatgctcaacaacccccatgtgccttccatggcctac
ctcaacaaagacagtaacatccccagtgtgggcagtgccatggaccaggactacagccag
agttacacaccccagacccatactcccttcatgtccaacagtgccccccccagcaacagt
ggcacgggcatcctgccctcaccggccaccccgcgcttctccgcccccacaccacgcact
ccccgtaccccacgcacccccagagggcccgccagtgtccagggctcgcttaagtacgag
aactctgacctctactcgcctgcctccaccccctccacctgtcgacccatcaactcagtg
gagccagccaccgtgccctccatccccgaggcccacagcctctacgtcaccctcatcctc
tcggagtccgtcatgaacctcttcaaggactgcaacttcgacagctgctgcatctgcgtg
tgcaacatgaacatcaagggggccgacgtgggggtgtacctgagcgaccccacgggagag
gcccagtacccctgcacctgcggcttcagcgctgtggtcaaccgccgctatggcaacggt
tcgggcctcttcctggaggacgagctggacatcatcggacgcgactcggacgtcagccgc
gaggcggagaagcgcttcgaggcgctgcggcaacactcgctggagaggacagggggagga
gggaggggggagagggtaccagacgaactgatcttactgctacaggaccagtgcaccaac
cccttctctcccatggctgggatggagcctgacagcctggcagcgcgggggcccgggggt
tgtccagtgccggcctgtgtgagggtggaggagagggactaccacagtgactgctacatg
gctctggagcacggccgccagttcatggacaacatgtcaggaggaaaggtggacgaggcc
ctggtcaagagtacttgtctacaccactggtccaaacaaaacgcggtggacatcagtgct
ctgtgctctcaggacgtgttgcgggtgctgctctccctccagcctgtactccaggatgcc
atccagaagaagaggacagtgcgctcctggggcgttcagggacccctcacctggcagcag
ttccacaagatggcgggacggggctcctacggcacagatgagtctccagagcccctgccc
atccctaccttcctggtgggttatgagtatgactttgtggtgctgtcgccctttggcctg
ccctactgggagaagctgctgctggacccctttggctcccacagggacgtgggctacctg
gtggtctgtcccgacaatgaggccctgctccagggggctaagagcttcttcagggacctc
accgccgtctacgagtcatgtcgtctgggccagcaccagccaatctcaaaaggtcacccg
gacggcatcgtgagagtgggcggatcggctgctaagaagctagcggagcagcccgtcagc
gattggttcatcaaggctgccagcagcaacagcgatgccttcgccaaactcaagctctat
gcgcaagtctgccgccacgacctcgctccatacctcgccgcacagcctttagacagctcc
ctcctcacacagcccacaccccctcctgccaccaaccaatgctcatccacacaatcctct
ggctcctcctccaccacctctgcttgcccccaaaactcagcgaccccctccctccccaac
aacaacagcagcagcgtgcctagtaacaacaccggtgtagccaacagtgccaacagcaca
gcgtcgtcagggagccagcccagcagcgggctgcagtctgccaagcccagctccttccct
ccctttgggaccatgagcatgcagaaccagggccagggtggtggcacccagggagggcag
ctgggccaacaggctggagcccagaacgcaggcctcaccggggtggactcagccagccag
gcccagtcacccactgaaccccttgagagcaccatggagcgagagaaggtgggtgtgccg
acggatggagaatctcatgccataacgtaccccccggccatcgtggtgtacatcgtggac
cccttcacctatgaggagcctgaggcggggtccagtgtgtggaccctgggcctgctgcgc
tgccacctggagatgctccagttcctcccaccacacatccgcaactctgtctctgtacag
atcatcccgtgccagtacctgctccagccggtgaggagcgaggagcgtcatatctacgct
cagcacctcaagtccctggccttctcagtgttctcccagtgcaggcgacccctccccaga
tccaccaacgtcaagtcgctgactggcttcggccccggcctggccatcaacaccacactg
aagagcccagagagaccagagtgtttacggctctacacgcctcccttcatcctggccccc
accaaggacaagcagactgagctgggggagacgttcggggaggcctctcagaagtacaac
gtgctgtttgtgggctactgcctgtcccacgaccagcgctggctcctggccacctgcacc
gacctgtacggagagctgctggagacctgcatcatcagcattgacgtgcccaacagagcg
cggaggaaaaagggctctgcccggaggtcgggcctgcagaagctgtgggattggtgcttg
gggctggtgcagatgacatctgtgccatggagggtggtgataggtcgcttgggccgaatg
ggacatggcgagttgagagactggagtattctgctgagcaggaggaacctgcagtctcta
agtcggcgtctcaaggagatgtgtcgaatgtgtggcatctctgcctccgacactcccagc
atccttagcgcctgtctggtcgccatggagccacagtgctcttttgtcatcatgccagac
tctgtgtctacaggctcagtgttcggccgcagcaccactctgaacatgcagacgtcccag
ctgagtactccccaggacacgtcctgcacccacatcctggtgttccccacttcagccttc
gtccaagtggccagctccaactacactactgacaccaacatagacatcgccttcaaccct
atccccgatgggtcggacgccatcgggatctttgacctgctggatcaggagaacgagctg
gtggaccctgacatcatcaacatcctgccctcctcacccaccacctcacccgtacactcc
cccggcggccactaccaccaggggggagacggcagcaagggccagagtacggatcggatg
gaatcccatgatgaagcgcctaacatcctgcagcagcccctggccctgggctactttgtg
tccacagccaaagccggcgcactgcctgactggttctggtcagcctgccctcaagctcag
aaccagtgtcctcttttcctcaaggcctctctgcacctccacgtgtcttcagtgcaatca
gatgaactgctgcacagcaaacactcccatccccttgactccaatcagacctcggacgta
ctcagatttgtgctggagcagtacaatgccctctcttggttgacgtgtgaccccgcaacg
caggaccggcgctcctgtctgcccatccactttgtggtgctcaaccagatgtacaacttc
atcatgaacatgttgtaa
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