Oncorhynchus keta (chum salmon): 118375323
Help
Entry
118375323 CDS
T09424
Symbol
shmt2
Name
(RefSeq) serine hydroxymethyltransferase, mitochondrial isoform X1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke00260
Glycine, serine and threonine metabolism
oke00630
Glyoxylate and dicarboxylate metabolism
oke00670
One carbon pool by folate
oke01100
Metabolic pathways
oke01200
Carbon metabolism
oke01230
Biosynthesis of amino acids
oke01240
Biosynthesis of cofactors
oke04981
Folate transport and metabolism
Module
oke_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
118375323 (shmt2)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
118375323 (shmt2)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
118375323 (shmt2)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
118375323 (shmt2)
Enzymes [BR:
oke01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
118375323 (shmt2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
118375323
NCBI-ProteinID:
XP_052382424
LinkDB
All DBs
Position
10:10012903..10058438
Genome browser
AA seq
503 aa
AA seq
DB search
MLSLTLRQIARPLCLRAPVALSSVGARRSQHAATRSVEQEAPWTGQDSLAQDDPEMWNLL
RKEKDRQCRGLELIASENFCSRAALEAQGSCLNNKYSEGYPGRRYYGGAEVVDQIELLCQ
KRALEAFDLDPALWGVNVQPYSGSPANFAAYTAVLNPHDRIMGLDLPDGGHLTHGYMSDT
KRISATSIYFESMPYKLNPATGLIDYDQLEMTARLFRPKLIIAGTSAYARLIDYARIKKL
CTEVKAYLLADMAHISGLVAAKAVPSPFKYADMVTSTTHKSLRGARAGLIFYRKGVRSVD
KKGKEIQYDLEDRVNFAVFPSLQGGPHNHAIAGVAVALKQAQTPMFREYIGQVMRNSKAM
AEALLSKGYTLVSGGTENHLVLVDLRPKGIDGARAERVLELVSITANKNTCPGDKSALAP
GGLRLGAPALTSRQFKEADFVQVVEFMDEGFKIALDVKKKTGKLADFKNFLLEDPETVSR
MAELKKRVEAFARPFPMPGFEDH
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcgttgacgttgaggcaaatcgcacggccattgtgcctgcgtgccccggtggcc
ctgagcagcgttggggcgaggaggagccagcatgcggctacccgtagtgtggaacaggag
gccccgtggactgggcaggacagtctggcccaggacgacccggagatgtggaacttgctg
cggaaagagaaggacaggcagtgtcggggactggagctcattgcctctgagaacttctgc
agtcgggctgcgctggaggcccaaggatcctgcctcaataacaagtactcagagggctac
ccaggcaggaggtactacggtggagctgaggtggtagaccagatagagttgttgtgccag
aagagagccctggaggcctttgacctggaccctgccctgtggggggtgaacgtccagccc
tactctggctctcccgccaacttcgctgcctacaccgccgtcctcaaccctcatgaccgc
atcatgggcctggacctgcctgacggtggacatctgacccatggttacatgtctgacacc
aagaggatatctgctacctccatctattttgagtccatgccctacaagctcaatcctgcc
acagggctcattgactatgaccagctggagatgactgcccgtctcttccggcccaagttg
atcattgcaggcaccagcgcctacgctcgcctcattgactacgctcgcatcaagaagttg
tgtacggaggtgaaagcctacctgctggctgacatggcccacatcagtggtctggtggct
gcgaaggctgtcccctcgccattcaagtatgctgacatggtcacctccacaacacacaag
tccctccggggagccagggctggtctgatcttctaccgtaagggcgtgcgttctgtggac
aagaaggggaaggagatccaatatgacctggaggaccgggtcaacttcgctgtgttcccc
tctcttcaggggggaccccacaaccacgccatcgccggggtggctgtcgctctcaaacag
gcccagacgccgatgttcagagagtacattggccaggtgatgcgtaactccaaggccatg
gctgaggccctactgagcaaaggatacacgttggtgtcaggggggacggagaaccatctg
gtgctggtggacctgaggcctaagggcattgatggagccagagcagagagagttctggag
ctggtgtccatcacagccaacaagaacacctgtcccggggataagagtgccctggcgcct
gggggcctccggctaggtgccccggcgctgacctccaggcagttcaaggaggcagacttt
gtccaggtggtggagttcatggatgaaggctttaagatcgccctggacgtcaagaagaag
actgggaaacttgcagactttaagaacttcttgttggaggatccagagacggtctctcgc
atggcagagctgaagaaacgagtggaggccttcgcacgtcccttccctatgcccggcttc
gaggatcactag
DBGET
integrated database retrieval system
