Oncorhynchus keta (chum salmon): 118375721
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Entry
118375721 CDS
T09424
Name
(RefSeq) collagen alpha-1(XXIII) chain-like isoform X1
KO
K24355
collagen type XXIII alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118375721
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118375721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118375721
NCBI-ProteinID:
XP_035618214
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All DBs
Position
4:complement(46170639..46236171)
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AA seq
493 aa
AA seq
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MDGKPGLPGPKGSQGPVGLKGDKGDQGDIGPRMVFPRYDHGFMSGDQSNFQRRLMKGDQG
SPGPRGPPGNTGKDGPRGPAGEQGFPGLDGVEGQAGVPGKPGEDGEPGYPGPQGPPGSKG
EAGLLGEKGERGMDGLPGFKGDKGDIGEQGTQGDLGYPGEKGVPGSTDVIDFNGKLLEAF
QAIQTISVGGPPGLPGPPGPPGGKGELGLPGTSGLDGEKGPKGDMGETGSIGEKGEKGEM
GLSGPGGRDGQKGDKGDSRLEDNLVQMISQPGPPGPPGPPGPTGYMGHHGTPGPKGEPGD
KAKGEKGDIGPAGLRGVDGPQGPPGSTGLVGLPGTKGEKGKSGEPGMDGFPGLIGEKGDR
GDRGDKGDRGTVGKRGLKGGKGEQGPPGLDQPCPVGSSGTKGLSDEEVQSASPPLPPSGP
EASCPLGQDGLPIPGCWHKEEKDEERRRQKLKRKRLALSQPRGESRPGGQREDAGETDSH
GSKEDRQPLLRES
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggatggcaaaccaggtctcccaggtcctaaaggaagtcagggaccagtgggactcaag
ggagataagggtgaccagggagacattgggcccaggatggtctttccccgctatgaccac
ggctttatgtctggtgaccagtccaactttcagagacgcttgatgaagggtgaccaagga
tccccgggccccagaggccctcctgggaacacaggcaaggacgggccccgcggccccgct
ggagaacagggtttccctggtctcgatggtgtggagggacaagcaggtgtacctggaaag
ccgggtgaagatggcgagccaggatacccagggccacagggacccccagggtcaaagggg
gaggctggtttgctgggagagaagggggagaggggcatggacggactcccagggtttaag
ggagacaaaggagatatcggagagcaaggcacccagggagacttgggttatcctggtgaa
aagggggttcctggctctactgacgtcattgacttcaatgggaagctactagaagccttc
caggccatccagaccatcagtgtcgggggcccaccagggttaccggggcccccaggaccc
ccaggaggaaagggagagctaggcttgcctgggacatctggactagatggggagaagggt
ccgaagggagatatgggggagacggggtcgatcggagagaaaggagagaaaggagagatg
ggtctctctgggccaggggggagggatggacagaagggggacaagggagactccaggctg
gaagataacctggttcagatgatttctcagccaggccctcccggccccccgggaccccct
ggacctacagggtacatgggccatcatggaacgcctggccctaagggagagcctggagac
aaagctaaaggggagaagggagacattggacctgctggactgaggggtgttgatggccct
cagggtccccccggctccacaggattggtgggtctcccagggaccaaaggagagaagggc
aagtctggggagcctggaatggatggtttcccaggcctgattggagagaagggagaccgg
ggagacagaggagacaagggtgaccgggggacggtggggaagagaggtctgaagggcggt
aagggggagcagggtcctcctggactggaccagccctgtcctgtgggttctagtgggact
aaaggactttctgatgaggaggtacagtccgcttctcctcctcttcctccttctggccct
gaggcctcctgtcctttggggcaggatggactgcccataccaggatgctggcacaaggag
gagaaggacgaggagaggaggagacagaaactcaaacgcaagcgtctcgctctctctcag
cccagaggggagagcaggcctggaggacagagggaagacgcgggagaaacagacagtcat
gggagcaaagaggacagacaacctctattgagagagtcatga
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